YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160333542, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETNSTGDA AEHIMCNYDA NIYQCNQTDL MRFQSPVPLT DTWLVPLFFT LIMFVGLVGN  60
   61 LIVIYVVIKN QQMKTVTNLY IVNLATTDIL FLVCCVPFTA TVYVLPSWIF GDFMCRLVNY 120
  121 LQQVTAQATC ITLSAMSVDR FYVTVYPLQS LHHRTPQMAL SVCTTIWICS SLLSVPIALY 180
  181 QHTESSYWFG PQTYCTETFP SVIHKRVYLL YSFLAVYLLP LITICMCYTF MLKRMAQATV 240
  241 QPVQGCNQIS LQTSSERAEA VRSRVSRMVV VMVLLFLLCW GPIQILILLQ AFCAEDVSRS 300
  301 YTLYKLKIWA HGMSYSNSSI NPVIYAFMGA NFRKAFRSVC PLIFKRRSTE PLATYNREMN 360
  361 FLSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.88
Transmembrane Helix	45	68	0.92
Cytoplasmic	69	79	0.84
Transmembrane Helix	80	105	0.81
Non-Cytoplasmic	106	123	0.74
Transmembrane Helix	124	143	0.83
Cytoplasmic	144	158	0.89
Transmembrane Helix	159	180	0.93
Non-Cytoplasmic	181	208	0.94
Transmembrane Helix	209	232	0.90
Cytoplasmic	233	267	0.97
Transmembrane Helix	268	288	0.92
Non-Cytoplasmic	289	310	0.84
Transmembrane Helix	311	329	0.65
Cytoplasmic	330	364	0.70