YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157326999, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSGEDWNSS ELLNGSFRNS SMEDSEDGEH PFLTDAWLVP LFFSLIMLVG LIGNSLVIYV  60
   61 ISKHRQMRTA TNFYIANLAA TDIIFLLCCV PFTATLYPLP GWIFGDFMCK FVAFLQQVTV 120
  121 QATCITLTAM SGDRCYVTVY PLKSLHHRTP RVAMIVSICI WIGSFILSIP IFLYQRLEDG 180
  181 YWYGPRKYCM ERFPSKTHEK AFILYQFIAV YLLPVITISF CYSFMLKRVG QASVEPVDNN 240
  241 HQVHLLSERT ISIRSKISKM VVVIVVLFTI CWGPIQIFVL FQSFYPNFKA NYATYKIKTW 300
  301 ANCMSYANSS INPIVYGFMG ASFRKSFRKT FPFLFRHKVR DSSVASRTAN AEIKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.98
Transmembrane Helix	38	61	0.91
Cytoplasmic	62	72	0.91
Transmembrane Helix	73	96	0.88
Non-Cytoplasmic	97	112	0.80
Transmembrane Helix	113	132	0.86
Cytoplasmic	133	151	0.84
Transmembrane Helix	152	174	0.94
Non-Cytoplasmic	175	202	0.97
Transmembrane Helix	203	224	0.93
Cytoplasmic	225	259	0.94
Transmembrane Helix	260	280	0.93
Non-Cytoplasmic	281	308	0.82
Transmembrane Helix	309	323	0.67
Cytoplasmic	324	355	0.70