YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157422718
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTNGILPC RLGLVVTLAG IVCLSIMFFW FSPSSTCPLQ FVQQVQHYES SSAKSSNSLT  60
   61 DTAENKPILL MWFWPEDFRF DLNDCKNIFN IDSCLLTVDR SLYSDADAVL IYHKSISWDL 120
  121 SNLSPSPRPP FQKWIWFHLE SPTNTQKKPG LENLFNHTLS YRQDADIFTR LHLTVRKKPA 180
  181 DDFVIPKKDK LVCWIVSNNA PVTGVGARNT FYQEFSKHIS VTMFGKAYAS HLEHKEYYPT 240
  241 IASCKFYLSF ENSIHKDYIT EKINGPLSVG TVPVVLGPPR KNYENFYPRD AFIHVQDFPD 300
  301 PKSVAEYLLQ LDKDEDAYRR YFDWRKYYSA TPHLLQQQEF DLPICTACDY IAKHKEYKEI 360
  361 HDLYEWYFN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.88
Transmembrane Helix	10	31	0.91
Non-Cytoplasmic	32	369	0.99