YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160333539, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQGPCDVIA LCLSLIGLIG VATVTALPMW RVTAFIGENI IVMETRWEGL WMNCYRQANI  60
   61 RMQCKVYDSL LYLPPDLQAA RGLTCCSLAL CGFGIIVSLF GLRCMSCLSD QPRNKSIILM 120
  121 ITGIIEILAS FCIVIPVSWT AHTIIRDFYN PLLLDAQRRE LGEALYIGWV TSAFLLASGV 180
  181 IFLCRRVDSN EQPFYARPPR NKQVPNHFQT FNSIRRQPLL QNNSFSTPQH SSAAFSFAVT 240
  241 PSSGQYSQHN VQPVVNGSLI YSPNMIPPQR VNYNGQNVMQ SQILASNSQH PVSDPRDSFN 300
  301 TGSAFHPVQQ NPLYVGYNYS RVQSGSSNSS TGLRI

Type	Start	End	Confidence
Cytoplasmic	1	7	0.93
Transmembrane Helix	8	30	0.89
Non-Cytoplasmic	31	78	0.96
Transmembrane Helix	79	102	0.92
Cytoplasmic	103	116	0.91
Transmembrane Helix	117	141	0.88
Non-Cytoplasmic	142	164	0.89
Transmembrane Helix	165	184	0.94
Cytoplasmic	185	335	0.95