YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|226545
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVTAAVS LPYSNSTSLP IRTSIVAPER LVFKKVSLNN VSISGRVGTI RAQVTTEAPA  60
   61 KVVKHSKKQD ENIVVNKFKP KEPYVGRCLL NTKITGDDAP GETWHMVFST EGEVPYREGQ 120
  121 SIGIVPDGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDA GEVVKGVCSN 180
  181 FLCDLKPGSE VKITGPVGKE MLMPKDPNAT VIMLGTGTGI APFRSFLWKM FFEKHEDYQF 240
  241 NGLAWLFLGV PTSSSLLYKE EFEKMKEKAP ENFRLDFAVS REQVNDKGEK MYIQTRMAQY 300
  301 AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWIEYKRTLK KAEQWNVEVY 360
  361

Type	Start	End	Confidence
Signal Peptide	1	16	0.54
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	360	0.81