YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FECD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIALVIFIT LALAGCALLS LHMGVIPVPW RALLTDWQAG HEHYYVLMEY RLPRLLLALF  60
   61 VGAALAVAGV LIQGIVRNPL ASPDILGVNH AASLASVGAL LLMPSLPVMV LPLLAFAGGM 120
  121 AGLILLKMLA KTHQPMKLAL TGVALSACWA SLTDYLMLSR PQDVNNALLW LTGSLWGRDW 180
  181 SFVKIAIPLM ILFLPLSLSF CRDLDLLALG DARATTLGVS VPHTRFWALL LAVAMTSTGV 240
  241 AACGPISFIG LVVPHMMRSI TGGRHRRLLP VSALTGALLL VVADLLARII HPPLELPVGV 300
  301 LTAIIGAPWF VWLLVRMR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	26	0.94
Non-Cytoplasmic	27	54	0.80
Transmembrane Helix	55	76	0.93
Cytoplasmic	77	84	0.80
Transmembrane Helix	85	103	0.82
Non-Cytoplasmic	104	108	0.59
Transmembrane Helix	109	130	0.84
Cytoplasmic	131	179	0.50
Transmembrane Helix	180	201	0.83
Non-Cytoplasmic	202	226	0.61
Transmembrane Helix	227	253	0.84
Cytoplasmic	254	267	0.84
Transmembrane Helix	268	287	0.95
Non-Cytoplasmic	288	295	0.67
Transmembrane Helix	296	315	0.94
Cytoplasmic	316	318	0.85