YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FDOI_ECO57
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRDTIVRY TAPERINHWI TAFCFILAAV SGLGFLFPSF NWLMQIMGTP QLARILHPFV  60
   61 GVVMFASFII MFFRYWHHNL INRDDIFWAK NIRKIVVNEE VGDTGRYNFG QKCVFWAAII 120
  121 FLVLLLVSGV IIWRPYFAPA FSIPVIRFAL MLHSFAAVAL IVVIMVHIYA ALWVKGTITA 180
  181 MVEGWVTSAW AKKHHPRWYR EVRKTTEKKA E

Type	Start	End	Confidence
Cytoplasmic	1	18	0.90
Transmembrane Helix	19	38	0.95
Non-Cytoplasmic	39	54	0.84
Transmembrane Helix	55	76	0.92
Cytoplasmic	77	113	0.95
Transmembrane Helix	114	133	0.97
Non-Cytoplasmic	134	148	0.80
Transmembrane Helix	149	171	0.89
Cytoplasmic	172	211	0.93