YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FDFT_NICBE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLRAILKN PEDLYPLVKL KLAARHAEKQ IPPSPNWGFC YSMLHKVSRS FALVIQQLPV  60
   61 ELRDAVCIFY LVLRALDTVE DDTSIPTDVK VPILISFHQH VYDREWHFSC GTKEYKVLMD 120
  121 QFHHVSTAFL ELRKHYQQAI EDITMRMGAG MAKFICKEVE TTDDYDEYCH YVAGLVGLGL 180
  181 SKLFHASEKE DLASDSLSNS MGLFLQKTNI IRDYLEDINE VPKCRMFWPR EIWSKYVNKL 240
  241 EELKYEDNSA KAVQCLNDMV TNALPHVEDC LTYMSALRDP SIFRFCAIPQ VMAIGTLAMC 300
  301 YDNIEVFRGV VKMRRGLTAK VIDRTRTIAD VYGAFFDFSC MLKSKVNNND PNATKTLKRL 360
  361 EVILKTCRDS GTLNKRKSYI IRSEPNYSPV LIVVIFIILA IILAQLSGNR S

Type	Start	End	Confidence
Non-Cytoplasmic	1	385	0.68
Transmembrane Helix	386	408	0.88
Cytoplasmic	409	411	0.46