YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FDFT_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFTKAAYF LLHPNQLRSI VQWKVWHEPV HRRDPSKETE TEKACFRHLE LTSRSFSAVI  60
   61 QELNPELLMP ICLFYLVLRG LDTIEDDMTI DLAKKEPLLR EFADLMEIDG WTFTENGPNE 120
  121 KDRELLVHFD DVIAELKKVK KPYYDIIREI TVKMGNGMAD YALNAEHNTN GVNTIEEYEL 180
  181 YCHYVAGLVG EGLTRLFVES NLANPALLER MELTESMGQF LQKTNIIRDI HEDYVDKRRF 240
  241 WPKTIWSKYV NTWDDMFKPE NREKALQCSS EMVLNALKHT EDCLFYMAGM RDQSVFNFVA 300
  301 IPQAMAIATL ELVFRNPAIF ERNVKITKGD ACQLMMESTQ NLRVVCEVFR RYARRIHKKN 360
  361 DPRDPNYLAI SVQCGKIEQF IESIFPTQDP KKIALAQAQN SNQTAANTTD NGDTTFLVLS 420
  421 MIGVLFVMGG LMIGAAWLMG ARFDMAYEDI TARVGTLVNG AAAVSSATVS SIPTTVMHQE 480
  481 L

Type	Start	End	Confidence
Non-Cytoplasmic	1	416	0.87
Transmembrane Helix	417	440	0.89
Cytoplasmic	441	453	0.76
Transmembrane Helix	454	476	0.73
Non-Cytoplasmic	477	481	0.71