YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD6C_BRANA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRIADSLF AFTGPQQCLP RAPKLASARL SPGVYAVRPI DLLLKGTRRT FLVPAKKRIG  60
   61 CIKAVFVPVA PPSADNAEDR EQLAESYGFK QIGQDLPDNV TLKDIMDTLP KEVFEIDDVK 120
  121 AWKSVLISVT SYALGLFMIA KAPWYLLPLA WAWTGTAVTG FFVIGHDCAH KSFSKNKLVE 180
  181 DIVGTLAFLP LVYPYEPWRF KHDRHHAKTN MLVHDTAWQP VPPEEFDSSP VLRKAIIFGY 240
  241 GPIRPWLSIA HWVNWHFNLR KFRPSEVNRV KISLACVFAF MAVGWPLIIY KVGVLGWVKF 300
  301 WLMPWLGYHF WMSTFTMVHH TAPHIPFKPA DEWNAAQAQL NGTVHCDYPS WIEILCHDIN 360
  361 VHIPHHISPR IPSYNLRAAH QSIQENWGKY TNLATWNWRL MKTIMTVCHV YDKEENYIPF 420
  421 DRLAPEESQP ITFLKKAMPD YAA

Type	Start	End	Confidence
Cytoplasmic	1	120	0.97
Transmembrane Helix	121	142	0.81
Non-Cytoplasmic	143	148	0.68
Transmembrane Helix	149	169	0.86
Cytoplasmic	170	269	0.79
Transmembrane Helix	270	289	0.95
Non-Cytoplasmic	290	300	0.73
Transmembrane Helix	301	322	0.79
Cytoplasmic	323	443	0.96