YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oatp58Db-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.96
Transmembrane Helix	92	114	0.90
Non-Cytoplasmic	115	130	0.87
Transmembrane Helix	131	153	0.87
Cytoplasmic	154	161	0.88
Transmembrane Helix	162	184	0.93
Non-Cytoplasmic	185	234	0.98
Transmembrane Helix	235	256	0.92
Cytoplasmic	257	276	0.90
Transmembrane Helix	277	298	0.95
Non-Cytoplasmic	299	316	0.95
Transmembrane Helix	317	338	0.96
Cytoplasmic	339	379	0.97
Transmembrane Helix	380	401	0.92
Non-Cytoplasmic	402	419	0.93
Transmembrane Helix	420	440	0.94
Cytoplasmic	441	454	0.80
Transmembrane Helix	455	472	0.50
Non-Cytoplasmic	473	574	0.52
Transmembrane Helix	575	590	0.74
Cytoplasmic	591	610	0.73
Transmembrane Helix	611	634	0.86
Non-Cytoplasmic	635	662	0.85
Transmembrane Helix	663	683	0.93
Cytoplasmic	684	722	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAAIRYLEA YFVYPQRQVN CMQLAAEFGI QSLAVVRQWT TIMASEEIEA SKFLKDKEAG  60
   61 INVADDEKRL NSSDTTCGFS IFRGPALQRF ATAHMFVIVY GIASCFLAMA FTYFTGTITT 120
  121 MEKRFNIPTK ISGLITVGND ISTVFSSAFL SYYASRGHRP RWVALGLIII AIFCLLMLTP 180
  181 HIFYGPGEEA LRLTEEYGMS ESFGASLNIT EKNDSLCHEK NSNCLERAGD YTPIVLFFIA 240
  241 QFIGGIGCSL FYAPGLSYMD DNSASSKTPA MLSWSSFLRM LGPAMGFSMV SLCLRLYIDP 300
  301 FKKPLITTND PRWMGAWWIG WILLTFILTI SAVFVGMFPK EMPRAKARRL KADGEEDIPL 360
  361 AGRSFQDMLD SLKRLASNKV YVYNMLASIL YLFGYMPYWI FTPKYIEIQY RQSASTSTMA 420
  421 TGTWALGFSA AGILISGYVI SKYKPSARAM AAWNFVVDYL TVAGMLCYVL VGCDESDRAN 480
  481 SLSIVPTGDS CSASCVCEYV YYAPVCSPEN ITFISACHAG CTDKAINELG KTIYTGCRCM 540
  541 GNVSSIISLS NVTSLASQSQ IAMDGACPVD CNKQFLIFLA VMCFLKFVGA TGRSSNLLLA 600
  601 LRCVPSKDKT FSLGFGSMVY SVLAFIPSPI VFGWMLDSYC LVWGKTCSSK GNCWIYDTKS 660
  661 LRYTMNLVCA SLIFLGSFWN IGVWYHAKDM KVFDEDEKTV QAKQSDDIEL KEKPNDVVTK 720
  721 KK