YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG34396-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTQSITPI PSTPPPSRRA NRPPRINIHN LTSGSAMSQA SMPPSAQPPY TAQTNFTGNG  60
   61 TQGPYWPPMA NPFGYGNFMT KGYEGFLDIT KSGLSFGEKM TFGMYKWSRR WFTHIFLILI 120
  121 LALYNIGGAV VFRTIEVRHA NQEKLVVQDQ QKSFFNEMRQ VSGDLSGLSK LEFEGQVLRI 180
  181 MNTYPTVVQS LLRSGMVDNT DPWSFWDAMV YSATIYTTIG YGHITPKTGM GRSLTIVYAI 240
  241 IGIPMFLIVL ADLGKLFTRC VKFLWVYVRR MYYTRSCRRI RKQQQIRSAM TGFNTMYDMA 300
  301 IRRPSMFFSN SAPENDEESQ ADAEAARSVG TSHPETPTSP YPETFEVDDE FNLPVSVASL 360
  361 LLITYILLGS FGFLMMEPSW TPLDAFYYVF ISMSTIGFGD LVPSNPFYVM VSMIYLMFGL 420
  421 ALTSMFINVV QIKLSDHFKM ASAKVGATIG MNMTSELGDE GGSQVKTPSE LASVHGSRLD 480
  481 RIEEDGQEAN GNGHSPVPPL TSILRAPRPL SPASNGVDAN GVGADAVGAG DVTPPPLLPR 540
  541 RQVSVDPQPP AEGENKKKKK HRFF

Type	Start	End	Confidence
Cytoplasmic	1	110	0.88
Transmembrane Helix	111	132	0.91
Non-Cytoplasmic	133	203	0.86
Transmembrane Helix	204	225	0.80
Cytoplasmic	226	233	0.76
Transmembrane Helix	234	256	0.88
Non-Cytoplasmic	257	354	0.84
Transmembrane Helix	355	375	0.92
Cytoplasmic	376	384	0.73
Transmembrane Helix	385	402	0.88
Non-Cytoplasmic	403	410	0.70
Transmembrane Helix	411	430	0.95
Cytoplasmic	431	564	0.96