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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: alphaPS4-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFCLLVIVLL ALQSEINAYN ISPYPNSVLN FPELEGNRRS SYFGFSLVIR EKSIMVAAPR  60
   61 ANSSLEAQRN ISEPGVIFRC YFESGNNCSP YNIDTKGNYK GMPNDGLLTA KNKDFRWLGG 120
  121 AMDGGTRDSD KFLVCAPRFY SINNENDYNN GMCYWLSDTP KNIDSTEVME KWPLRIEKKQ 180
  181 VLKLADTNLI PYYSMGELGL SAHVSDDNSK LLMGAPGIDQ WKGSVHLKQE VPSIKTSSGR 240
  241 QRRGMNTNRK CNECNPEPKN FGQEEFSYFG YAVSSGYFDS SNLSTVLYVA TAPRGNNQFG 300
  301 EAYIFDIYED SIYKYHEFRG NHFGEYFGYS VLAEDLNGDG KTDVIISAPL YALRNSYDDG 360
  361 AIYVFINKGS FTFEERIIRS PAGSGGRFGT TLSRIGDINK DGYNDVAVGA PFAGNGSVFI 420
  421 YLGSENGLRD PPSQCLDAPS QQPSKYGSYM FGHGLSRGSD IDGNGFNDFA IGAPNAEAVY 480
  481 LYRAYPVVKI HAIIKPKLQN VNPEEERVNI TVCYRLSSKS DSKAKALMEQ ELVIRIDIDT 540
  541 KSKIKLAVFD EEHGSQMSFK AKAFHEEICS EFQIEMDKRA KFTPIALEMQ YELSKKIPNS 600
  601 GDFCEDCAVV DPAEPKFVTE YITFNTGCAT DVCVADLKIS CINASSTLVL GTTAVLRLTY 660
  661 NITNNGEFAY HPKFSVTNSA GLSLAQVPGN CKVNEAVMVC DLNHGQRMAK GDTDSLTISF 720
  721 DVRQLRGRSL EIQAEVLSAR DESNPENNKL TNVLSLREKA DIYVSGVQTN DHVVLKESPY 780
  781 TAEVVNYYEI KSHGPSTLEN LTVSLYIPVA YKTPDSTNVK HIVTSSPKIQ SKYAHKIMPI 840
  841 NFIDQNNALA NNFAIDHDQS TLLFSATPQH ENVGNLSGIV EQNPSISLLN EDLPVNNTLV 900
  901 LNCQDTNVTL CVPVEIRLEN GLQLKPEELM NMTVSFTVNL KDADDIWEYF VIQTDLKVHK 960
  961 IGDPTLSSFT IEKKIESNVI CKHAEIAIWK IIVSVIVGIL VFSAATYALY KRGFFKRAIK1020
 1021 DDLKQLIRDS FEDGIIRTEM EENAQSQGDA DLDEKLDAYA DTTGKCTHV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle