YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG30106-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIANLVSMET DLAMNIGLDT SGEAPTALPP MPNVTETLWD LAMVVSQSTQ WPLLDTGSSE  60
   61 NFSELVTTET PYVPYGRRPE TYIVPILFAL IFVVGVLGNG TLIVVFLSVR QMRNVPNTYI 120
  121 LSLALADLLV IITTVPLAST VYTVEYWPYG SFLCSLSEFM KDVSIGVSVF TLTALSGDRY 180
  181 FAIVDPLRKF HAHGGGRRAT RMTLATAVSI WLLAILCGLP ALIGSNLKHL GINEKSIVIC 240
  241 YPYPEEWGIN YAKSMVLLHF LVYYAIPLVV IAVFYVLIAL HLMYSASVPG EIQGAVRQVR 300
  301 ARRKVAVTVL AFVVIFGICF LPYHVFFLWF YFWPTAQDDY NAFWHVLRIV AYCMSFANSC 360
  361 ANPVALYFVS GAFRKHFNRY LFCRGASGRR KKRGQHDTFC MHRDTSLTST ASKRFQSRHS 420
  421 CYQSTIRSCR LQETTITTLP NGGNQNGANI SAVELALPVL QAPGHNEAHA PPSYGFLPLN 480
  481 EIVQQTRSSP AKFQESLLN

Type	Start	End	Confidence
Non-Cytoplasmic	1	83	0.87
Transmembrane Helix	84	107	0.91
Cytoplasmic	108	118	0.80
Transmembrane Helix	119	142	0.88
Non-Cytoplasmic	143	162	0.85
Transmembrane Helix	163	182	0.90
Cytoplasmic	183	201	0.94
Transmembrane Helix	202	223	0.95
Non-Cytoplasmic	224	260	0.95
Transmembrane Helix	261	284	0.90
Cytoplasmic	285	304	0.95
Transmembrane Helix	305	327	0.94
Non-Cytoplasmic	328	347	0.89
Transmembrane Helix	348	369	0.93
Cytoplasmic	370	499	0.98