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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SP1070-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQSTAANSH WLAALLSSLL LLNLLHLIGA DEAFSCPNGW ELRGLNCYKY FNIKHSWDKS  60
   61 AELCRRYGAE LVAIDSYAEN NETLAIARAS DPNQRASDKY WLGLASLDDL RTNTLESASG 120
  121 ALISQYSGYW SLHQPNAESG ECVAAAFAGK SQSWDLGTCE SLLPFMCRAQ ACPQGSLHCA 180
  181 NGKCINQAFK CDGSDDCGDG TDELDCPAQC HYHMQSGGDV IETPNYPHKY GALSKCKWTL 240
  241 EGPLGSNIIL QFQDFETEKT FDTVQILVGG RTEDKSVSLA TLSGKQDLTT QPFVSASNFM 300
  301 IVKFTTDGSV ERKGFRATWK TEAKNCGGTL KATLQRQILT SPNYPKQYPG GLECLYVIKA 360
  361 QPGRIISIEV DDLDIADGRD FLMIRDGESP MSRTIAKLTG KTAQNNRVII STGNALYLYF 420
  421 KSSLGEAGKG FSLRYIQGCK ATITARNGTV TSPAFGLADY PKNQECYFTI RNNARAPLSL 480
  481 KFDKFTVHKS DNVQVFDGSS TSGLRLHSGN GFTGPAAPKL TLTASSGEML IKFTSDALHN 540
  541 AAGWSATFSA DCPELQPGIG ALASSRDTAF GTLVSFTCPI GQEFATGKTR LVTECLRGGN 600
  601 WSVSYIPKCQ EVYCGPVPQI DNGFSIGSSN VTYRGIAMYQ CYAGFAFASG APIEKISCLP 660
  661 DGRWERQPHC MASQCAALPE VAHANVTLLN GGGRSYGTIV QYECEPGYER NGHPVLTCMS 720
  721 NGTWSGDVPR CTRKRCFEFP TIANGFVVDS TRAYLFGDEA RVQCFKGYKL IGSNIMRCSE 780
  781 AQKFEQPPTC EDINECSSSQ CDLTTTECQN TNGSFHCQCR TGFTATTECR PVGDLGLGNG 840
  841 GIPDDSITTS VSEPGYSKEQ LRLNTNGWCG GSSEPGANWI LIDLKAPTIL RGFRTMSVQR 900
  901 PDGNVAFSSA VRLQYTNDLT DVFKDYANPD GTAVEFRILE PTLSILNLPL PIEARYIRFR 960
  961 IQDYVGAPCL RMELMGCTRL DCVDINECSK NNGGCDQKCI NSPGGFACGC NTGYQLYTSN1020
 1021 GTAGYHIERS ESGERDGDTY QRNKTCVPLM CPELEAPENG QLLSDKNDYH FGDVVRFQCH1080
 1081 FGYIMSGSSA ALCLSSGQWN ASVPECNYAK CVSLPDDKLE GLTVARPDPE SVLVPFRDNV1140
 1141 TITCGSPGRQ LRATASSGFR QCVYDPKPGL PDYWLSGMQP SCPRVDCYSP MPTPGAEYGQ1200
 1201 FVDTRYQSSF FFGCQNTFKL AGQTGRHDNV VRCGADGIWD FGDLRCEGPV CEDPGRPADG1260
 1261 RQIARSYEQS SEVYFGCNRP GYILINPRPI TCIREPECKV IKPLGLSSGR IPDSAINATS1320
 1321 ERPNYEAKNI RLNSATGWCG KQEAFTYVSV DLGQIYRVKA ILVKGVVTND IVGRPTEIRF1380
 1381 FYKQAESENY VVYFPNFNLT MRDPGNYGEL AMITLPKFVQ ARFVILGIVS YMDNACLKFE1440
 1441 LMGCEEPKQE PLLGYDYGYS PCVDNEPPIF QNCPQQPIVV RRDENGGVLP VNFTEPTAVD1500
 1501 NSGSIARLEI KPQNFRTPSY IFKDTVVKYV AFDYDGNVAI CEINITVPDV TPPLLQCPQS1560
 1561 YVIELVDRQD SYTVNFNDTR KRIKTSDDTG DVRLQFSPES ANIKIGNFEN VTVTATDKYN1620
 1621 NRAACHFQVS VKASPCVDWE LQPPANGAIN CLPGDRGIEC IATCKPGFRF TDGEPLKTFS1680
 1681 CETSRLWRPT SVVPDCVSEN TEQAAYHVTA SITYRANGAV AQSCLGQYQE VLAQHYGGLN1740
 1741 QLLSQRCSAV NVNMNVTFVK SVPMLLEENV VKMDFILSIL PAVRQPQLYD LCGSTLNLIF1800
 1801 DLSVPYASAV IDDLLNIANI GNQCPPLRAL KSQISRGFNC NVGEVLNMDT SDVPRCLHCP1860
 1861 AGTYVSEGQN SCTYCPRGYY QNRDRQGTCL RCPAGTYTKE EGTKSQADCI PVCGYGTYSP1920
 1921 TGLVPCLECP RNSFTAEPPT GGFKDCQACP AQSFTYQPAA SNKDLCRAKC APGTYSATGL1980
 1981 APCSPCPLHH YQGAAGAQSC NECPSNMRTD SPASKGREQC KPVVCGEGAC QHGGLCVPMG2040
 2041 HDIQCFCPAG FSGRRCEQDI DECASQPCYN GGQCKDLPQG YRCECPAGYS GINCQEEASD2100
 2101 CGNDTCPARA MCKNEPGYKN VTCLCRSGYT GDQCDVTIDP CTANGNPCGN GASCQALEQG2160
 2161 RYKCECVPGW EGIHCEQNIN DCSENPCLLG ANCTDLVNDF QCACPPGFTG KRCEQKIDLC2220
 2221 LSEPCKHGTC VDRLFDHECV CHPGWTGSAC DINIDDCENR PCANEGTCVD LVDGYSCNCE2280
 2281 PGYTGKNCQH TIDDCASNPC QHGATCVDQL DGFSCKCRPG YVGLSCEAEI DECLSDPCNP2340
 2341 VGTERCLDLD NKFECVCRDG FKGPLCATDI DDCEAQPCLN NGICRDRVGG FECGCEPGWS2400
 2401 GMRCEQQVTT CGAQAPCQND ASCIDLFQDY FCVCPSGTDG KNCETAPERC IGDPCMHGGK2460
 2461 CQDFGSGLNC SCPADYSGIG CQYEYDACEE HVCQNGATCV DNGAGYSCQC PPGFTGRNCE2520
 2521 QDIVDCKDNS CPPGATCVDL TNGFYCQCPF NMTGDDCRKA IQVDYDLYFS DPSRSTAAQV2580
 2581 VPFPTGEANS LTVAMWVQFA QKDDRGIFFT LYGVQSARMT QQRRMLLQAH SSGVQVSLFE2640
 2641 DQPDAFLSFG EYTSVNDGQW HHVAVVWDGI SGQLQLITEG LIASKMEYGA GGSLPGYLWA2700
 2701 VLGLPQPYGL SNELAYSDSG FQGTITKAQV WARALDITSE IQKQVRDCRS EPVLYPGLIL2760
 2761 NWAGYEVTSG GVERNVPSLC GQRKCPVGYT GANCQQLVVD KEPPVVEHCP GDLWVIAKNG2820
 2821 SAVVSWDEPH FSDNIGVTKI YERNGHRSGT TLLWGTYDIT YIASDAAGNT ASCSFKVSLL2880
 2881 TDFCPALADP VGGSQVCKDW GAGGQFKVCE IACNAGLRFS EPVPEFYTCG AEGFWRPTRE2940
 2941 PSMPLVYPSC SPSKPAQRVF RIKMLFPSDV LCNKAGQAVL RQKVTNSVNG LNRDWNFCSY3000
 3001 AIEGTRECKD IQIDVKCDHY RGTQNNRVRR QAKDGGVYVM EAELPVVNDP VVHTSTGERS3060
 3061 TVKQLLEKLI LEDDQFAVQE ILPNTVPDPA SLELGSEYAC PVGQVVMIPD CVPCAIGTFY3120
 3121 DSANKTCIAC SRGTYQSEAG QLQCSKCPVI AGRPGVTAGP GARSAADCKE RCPAGKYFDA3180
 3181 ETGLCRSCGH GFYQPNEGSF SCELCGLGQT TRSTEATSRK ECRDECSSGQ QLGADGRCEP3240
 3241 CPRGTYRLQG VQPSCAACPL GRTTPKVGAS SVEECTLPVC SAGTYLNATQ NMCIECRKGY3300
 3301 YQSESQQTSC LQCPPNHSTK ITGATSKSEC TNPCEHIAEG KPHCDVNAYC IMVPETSDFK3360
 3361 CECKPGFNGT GMACTDVCDG FCENSGACVK DLKGTPSCRC VGSFTGPHCA ERSEFAYIAG3420
 3421 GIAGAVIFII IIVLLIWMIC VRSTKRRDPK KMLTPAIDQT GSQVNFYYGA HTPYAESIAP3480
 3481 SHHSTYAHYY DDEEDGWEMP NFYNETYMKD GLHGGKMSTL ARSNASLYGT KEDLYDRLKR3540
 3541 HAYTGKKGTI TIATLPLNLP Y

YRC Informatics Platform - Version 3.0
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