YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG34381-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.89
Transmembrane Helix	103	122	0.83
Non-Cytoplasmic	123	186	0.95
Transmembrane Helix	187	211	0.90
Cytoplasmic	212	220	0.89
Transmembrane Helix	221	244	0.89
Non-Cytoplasmic	245	263	0.86
Transmembrane Helix	264	285	0.87
Cytoplasmic	286	297	0.88
Transmembrane Helix	298	317	0.85
Non-Cytoplasmic	318	356	0.89
Transmembrane Helix	357	376	0.94
Cytoplasmic	377	433	0.93
Transmembrane Helix	434	452	0.70
Non-Cytoplasmic	453	519	0.70
Transmembrane Helix	520	540	0.68
Cytoplasmic	541	551	0.91
Transmembrane Helix	552	573	0.93
Non-Cytoplasmic	574	592	0.94
Transmembrane Helix	593	616	0.89
Cytoplasmic	617	669	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMTMMQTVR AWQQESDVEH RKQHKQRWRP DGAHISAAYD LNSDNDDGHH RVVHNQNNGS  60
   61 PNSSPNQSTS AFRQRQPHHP PTGQQPPRLP CTVTHFSAHW KTLLILLTLL SASTLTASAN 120
  121 VTSTISPPIN GSSTDYILLY GESTTSLVPA LTTGLSGDGS GAVIEDEEDA EKASEYIFDR 180
  181 TDVRIIFITL YTLVFCCCFF GNLLVILVVT LSRRLRSITN FFLANLAFAD FCVGLFCVMQ 240
  241 NLSIYLIESW VFGEFLCRMY QFVHSLSYTA SIFILVVICM ERYFAIVHPI TCKQILTAAR 300
  301 LRMVIVTVWI TSAVYSTPKF VFSKTIKNIH TQDGQEEEIC VLDREMFNSK LLDMINFVLL 360
  361 YVMPLLVMTV LYSKIAIALW RSSRGLTPHV VQHQHQQPQQ PSCQDIGMGM HNSMYHHHPH 420
  421 HHHHHHQHHQ LQSAASSAGV VGVGLGGGGG GGPGPSLASG GSSTTSLSRK QSSKYEKRGV 480
  481 SITESQLDNC KVSLEADRPI VSACRKTSFY HHGHAHHQRA GNASVGGGSG GAGAGATHMS 540
  541 HSSSNVLRAR RGVVRMLIIF VLTFALCNLP YHARKMWQYW SRSYRGDSNF NALLTPLTFL 600
  601 VTYFNSGVNP LLYAFLSRNF RKGMKELLLC SWKKGKGKSS SNSSMHHKRK ALQTHSLPTD 660
  661 TTHIGNEQL