YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG33282-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	38	0.87
Non-Cytoplasmic	39	58	0.92
Transmembrane Helix	59	80	0.92
Cytoplasmic	81	89	0.82
Transmembrane Helix	90	109	0.95
Non-Cytoplasmic	110	115	0.80
Transmembrane Helix	116	137	0.94
Cytoplasmic	138	146	0.84
Transmembrane Helix	147	167	0.93
Non-Cytoplasmic	168	173	0.71
Transmembrane Helix	174	194	0.92
Cytoplasmic	195	263	0.96
Transmembrane Helix	264	284	0.90
Non-Cytoplasmic	285	301	0.83
Transmembrane Helix	302	322	0.91
Cytoplasmic	323	329	0.81
Transmembrane Helix	330	352	0.92
Non-Cytoplasmic	353	364	0.83
Transmembrane Helix	365	388	0.92
Cytoplasmic	389	397	0.84
Transmembrane Helix	398	418	0.92
Non-Cytoplasmic	419	427	0.70
Transmembrane Helix	428	448	0.95
Cytoplasmic	449	460	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFLKNSLL QQKTRYQLLA TVIVNIITFG HGVGVGWLSP TLTKIQTADS PLDFEVNLAQ  60
   61 ISWLGSMLGL DSLCGNLTIA MLIERAGRKF CLYLMAGPYA CIWILIYCAS NVYYLYAARF 120
  121 LCGFTGGAGY LVVPIFISEV ADSNIRGALT SMVMLSVDLG ILAGYILSTY LAYHVVPFLA 180
  181 IILPVAYFIA NIMLPETAPY LLKKSQLAAA ENSFRYYRNQ RSAICEQTSK VNFEELRTAV 240
  241 LSQQTRNATP LSYKDLTTKP ALKGFAASIV LSLGYQFSGV FSFINYMSDI FKASGSVVDV 300
  301 NTATIIIGLV QIVGVYTSTI LVDIVGRRVL MLISTMGVGI GCIAFGCFTY LAKIYDLSDF 360
  361 NWLPLVLMII ICYVANIGLI GIFFLVLVEL FPVKIRSLAT SLSVIFLSLL VFGTLKLFPL 420
  421 MLHYWGISFT MWFSAASALL TFFYFWLFLQ ETKGKSMIED