YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG15400-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIVHILSD AYHTTLTREL FINEWAQERL SFGRPLWHFL SVHLEPNKMF NIIIPLCGIF  60
   61 SQEILVHLFT AFTLISTLNS FEKWIYPETR PLWFLREQFA NNVVVKKPAV ALESHQLSCE 120
  121 MTGGLPCAHS MTFTVFVLIL ASFFFVHCWD RFAALRSSFC RCIMYLLIIG MVVCMWLSRL 180
  181 YLATEFLHQC ILGSYLGIRS LCTFEGNVKY LFSRPRRYAV SAVFFLGGLA LSVYYVKLEL 240
  241 NIDPHWSVRE AFKWCPEPTY LRHEVGPIFA LVRDLGNLMG LALASPLYKL EMKQSSFWRR 300
  301 CRFLGVLEFV NYGLRFSTFK QSGRFVFLTY EFLRNVIHSL VLIKYVSKFY

Type	Start	End	Confidence
Cytoplasmic	1	51	0.95
Transmembrane Helix	52	75	0.79
Non-Cytoplasmic	76	126	0.94
Transmembrane Helix	127	149	0.88
Cytoplasmic	150	158	0.87
Transmembrane Helix	159	180	0.89
Non-Cytoplasmic	181	185	0.71
Transmembrane Helix	186	208	0.71
Cytoplasmic	209	217	0.74
Transmembrane Helix	218	238	0.91
Non-Cytoplasmic	239	269	0.86
Transmembrane Helix	270	290	0.69
Cytoplasmic	291	350	0.70