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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CG32000-PH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASQSKACD SPSETVHLQS LPNHIEDLKF RNSDVETDDD LHFPGIAAKN KILKLSWWHS  60
   61 PVDMHYVATE SVQPKKSDKV PSNKIKKVEN NNTLVNGCSK TSARSVPLLK YNRPDQDGDS 120
  121 EENITSVLEP NVDEIYSKDS ERLVDDSKPC IGLLNPDQED QMKVCGYRRS LMRTGFCWAC 180
  181 IFLTGGLLRL VLHWWRHLYL YATCSQCSLE EAEQVLVTED YQGKHKMYHV KQIQVLTSSN 240
  241 LKTLLEKEQQ SIERTHIECD HVENVLQLSV HFTSAQFKKC SSIRIFRCKQ LVYAWNNNTN 300
  301 RFQRINGLDL NIPCSYYHQQ RGLPVHEQIS RRIVFGDNEI TVPLRDFKTL LFLEVLNPFY 360
  361 VFQLFSVILW FTYDYYYYAC VILLMSVFGI TVSVLQTKKN QDVLQKTVYN TGNAWVVDHK 420
  421 GLSKELPTRA IVPGDIIEIP SSGCTLHCDA ILISGNCILD ESMLTGESVP VTKTPLPSKR 480
  481 DMIFDKTEHA RHTLFCGTKV IQTRYIGSKK VLAFVINTGN ITAKGELIRS ILYPPPVDYK 540
  541 FEQDSYKFIQ FLAIIACVGF IYTLVTKILR GTDPVKIAVE SLDLITIVVP PALPAAMTVG 600
  601 RFYAQKRLKT SEIFCISPRS INVAGSINCC CFDKTGTLTE DGLDMWGVVP KSSTNQFQIP 660
  661 LKSVDRLPFD HFLFGMVTCH SITILNGRMM GDPLDLKMFE STGWELEDSN NIPDTEKYGI 720
  721 LYPTILRQPR GGLSGMAETE SGSKNEIKRQ SSVDDLLATV GISPSQKNFD HGIVREFPFT 780
  781 SALQRMSVVT RCLSDQVFNV YCKGSPEMLK KLCKPQSLPD NYSQQLSEFA KKGYRIIAIA 840
  841 FKALSHKMNY TKVQRLSREE VENNMEFLGF VILENRLKPD TTKVINALNA AKIRTIMITG 900
  901 DNILTAISVA RDCGIVSPSQ SVITVHADPI GDSANIQTNT GTECNFDNSS DKHYKLHYTL 960
  961 DLGSKTSRAY LFKSCFNSNL FDPETPEFTA QVGKTIFHME STNSLVNEST SSYAESGLPT1020
 1021 SDSLASVKTI DTWTHNDAEL GIKHTPDESW RRQECIFAMD GKTWQIVKDY FPEEMEILLT1080
 1081 RGSIYARMSP DQKQALVIEL QNLDYCVAMC GDGANDCGAL KVAHAGISLS ETEASIASPF1140
 1141 TSRNPTISAV LKVIKEGRAA LVTSFGIFKY MAAYSLVQFI SVMILYSIDS NLTDKQYLYV1200
 1201 DLGLISIFAF FFGKTESFDG MLVEQVPLSS LISSTPLASL LLHLTVVTAF QVTCWVHLHQ1260
 1261 QPWFKAFEPA DEDHLGCFEN YTMFCISSFQ YIILAFVFSK GAPYRKPLWS NWPLCLAFIV1320
 1321 NLCIIVYLVL YPSDWVASFF QLIVPPTMRF RYVMLAYGAA SFICHIFVES FLVEYLVFKK1380
 1381 YQVKREKNWV TSKQKYMRLE HDISNIKNWP PITEVYEPNN LIDCETEQPT YVSLHAEQNH1440
 1441 DTQLGKFPGF C

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle