YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGILGIGR YVPEKVVTNH DLEKIMDTSD EWIRTRTGIA ERRIADDTID TSYMAVEASK  60
   61 KALEDAGISG EDIDLILVAT VTPDRAFPAV ACVIQEAIGA KHAAAMDLSA ACAGFMYGMI 120
  121 TAQQFIQTGT YKNVLVVGSD KLSKIVDWND RNTAVLFGDG AGAIVMGAVS EGKGVLSFEL 180
  181 GADGSGGKHL YQDEYVMMNG REVFKFAVRQ LGDSCLRVLD KAGLTKEDVD FLVPHQANIR 240
  241 IMESARERLN LPQEKMSMTI EKFGNTSASS IPIAMVEELQ NGRIQDGDLI ILVGFGGGLT 300
  301 WGAVALRWGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	288	0.79
Transmembrane Helix	289	309	0.77
Cytoplasmic	310	310	0.70