YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FADS2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGGQQTDR ITDTNGRFSS YTWEEVQKHT KHGDQWVVVE RKVYNVSQWV KRHPGGLRIL  60
   61 GHYAGEDATE AFTAFHPNLQ LVRKYLKPLL IGELEASEPS QDRQKNAALV EDFRALRERL 120
  121 EAEGCFKTQP LFFALHLGHI LLLEAIAFMM VWYFGTGWIN TLIVAVILAT AQSQAGWLQH 180
  181 DFGHLSVFKT SGMNHLVHKF VIGHLKGASA GWWNHRHFQH HAKPNIFKKD PDVNMLNAFV 240
  241 VGNVQPVEYG VKKIKHLPYN HQHKYFFFIG PPLLIPVYFQ FQIFHNMISH GMWVDLLWCI 300
  301 SYYVRYFLCY TQFYGVFWAI ILFNFVRFME SHWFVWVTQM SHIPMNIDYE KNQDWLSMQL 360
  361 VATCNIEQSA FNDWFSGHLN FQIEHHLFPT VPRHNYWRAA PRVRALCEKY GVKYQEKTLY 420
  421 GAFADIIRSL EKSGELWLDA YLNK

Type	Start	End	Confidence
Cytoplasmic	1	131	0.90
Transmembrane Helix	132	154	0.72
Non-Cytoplasmic	155	155	0.42
Transmembrane Helix	156	178	0.72
Cytoplasmic	179	264	0.85
Transmembrane Helix	265	284	0.92
Non-Cytoplasmic	285	305	0.80
Transmembrane Helix	306	326	0.87
Cytoplasmic	327	444	0.90