YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FD123_TRAVE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSALDLNP PNATFHLSTH GSDWLWAAFS VFGVSLLTVV AWTFTRPRGA RLFHQIAIVV  60
   61 LTTGSLAYFS MASDLGATPV PVEFRGEGTR QIWFVRYIQW FITFPLLLLE LLLATGLSLS 120
  121 DIFTTLFMSI VLVITGLVAA LVPSTYKWGY YTFGVSALFY IWYVLLWHGP HTTFAAGGVL 180
  181 RRGYILAAGY LSFLLLLYPI AWACAEGGNV ISVTSEMIWY GILDIFAGPI FLFFFLWELR 240
  241 GVDYATFGLH SGKYTDKSAY APNTAQAAGT VPATTSTGAA GNV

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.95
Transmembrane Helix	24	44	0.95
Cytoplasmic	45	51	0.87
Transmembrane Helix	52	72	0.92
Non-Cytoplasmic	73	96	0.84
Transmembrane Helix	97	114	0.94
Cytoplasmic	115	121	0.72
Transmembrane Helix	122	142	0.93
Non-Cytoplasmic	143	148	0.75
Transmembrane Helix	149	169	0.88
Cytoplasmic	170	182	0.78
Transmembrane Helix	183	202	0.93
Non-Cytoplasmic	203	216	0.83
Transmembrane Helix	217	237	0.93
Cytoplasmic	238	283	0.93