YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG3_LEPMC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIVLEVCDT FLFDPLYATL LPAQASSFTA NATANATLSS IRQEPTAYAL PHASWQYEPA  60
   61 TKYFSIEPSK YAYMSSWPRD DWRRQALTLY LITWLFGVCV YYLFAGLSYL LVFDKATFNH 120
  121 PRYLKHQIKL EMKQANIAFP IMAIFTVPWF LAEVRGYSKL YDTTEKGPGR WYDYLQIPFF 180
  181 IAFTDLCIYW IHRGLHHPMV YKHIHKPHHK WIMPTPFASH AFHPIDGYAQ GLPYYIFPFL 240
  241 FPLSKIASVA FFVFVNIWTV LIHDGEYAHN SPIINGAACH TMHHLYFNYN YGQFTTLWDR 300
  301 LGGSYRKPND ELFKRELKMC QDEWNKQAKA VDMMVEQVEG ENDRSYQGEP ESKKVQ

Type	Start	End	Confidence
Cytoplasmic	1	86	0.78
Transmembrane Helix	87	111	0.85
Non-Cytoplasmic	112	133	0.74
Transmembrane Helix	134	152	0.85
Cytoplasmic	153	171	0.62
Transmembrane Helix	172	192	0.89
Non-Cytoplasmic	193	238	0.70
Transmembrane Helix	239	260	0.85
Cytoplasmic	261	356	0.87