YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG3_CANGA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVLETLDH YIFDDVYAKI APVELQRGID DSLVNALSLN KIVSNSTLLH ETLSITNSLK  60
   61 RVNKDVYGLT PFLFDFTEKT YASLLPRNNL IREFFSLWAV VTVFGLLLYL ITASLSYVFV 120
  121 FDRTIFNHPK YLKNQMYLEI KLAVSAIPTM SLLTVPWFML ELNGYSKLYY DVDWEHHGLR 180
  181 KLLIEYATFI FFTDCGIYLA HRWLHWPRVY KALHKPHHKW LVCTPFASHA FHPVDGYFQS 240
  241 LSYHIYPMIL PLHKISYLIL FTFVNFWSVM IHDGQHMSNN PVVNGTACHT VHHLYFNYNY 300
  301 GQFTTLWDRL GGSYRRPEDS LFDPKLKMDK KVLEKQARET AAYIQEVEGD DTDRVYNTDK 360
  361 KKTN

Type	Start	End	Confidence
Non-Cytoplasmic	1	93	0.58
Transmembrane Helix	94	121	0.84
Cytoplasmic	122	139	0.55
Transmembrane Helix	140	160	0.87
Non-Cytoplasmic	161	181	0.63
Transmembrane Helix	182	204	0.83
Cytoplasmic	205	216	0.63
Transmembrane Helix	217	233	0.48
Non-Cytoplasmic	234	249	0.64
Transmembrane Helix	250	269	0.85
Cytoplasmic	270	364	0.83