YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG3_CANAX
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIVLEICDY YLFDKVYADV FPKDGAVHEF LKPAIQSFSQ IDFPSLPNLD SFDTNSTLIS  60
   61 SNNFNISNVN PATIPSYLFS KIASYQDKSE IYGLAPKFFP ATDFINTSFL ARSNIFRETL 120
  121 SLFIITTIFG WLLYFIVAYL SYVFVFDKKI FNHPRYLKNQ MSLEIKRATT AIPVMVLLTI 180
  181 PFFLLELNGY SFLYLDINEC TGGYKAILWQ IPKFILFTDC GIYFLHRWLH WPSVYKVLHK 240
  241 PHHKWIVCTP FASHAFHPVD GFFQSLPYHL YPLLFPLHKV LYLFLFTFVN FWTVMIHDGS 300
  301 YWSNDPVVNG TACHTVHHLY FNYNYGQFTT LWDRLGNSYR RPDDSLFVKD VKAEEEKKIW 360
  361 KEQTRKMEEI RGEVEGKVDD REYVEQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	121	0.83
Transmembrane Helix	122	146	0.90
Cytoplasmic	147	166	0.83
Transmembrane Helix	167	185	0.94
Non-Cytoplasmic	186	205	0.82
Transmembrane Helix	206	229	0.71
Cytoplasmic	230	241	0.73
Transmembrane Helix	242	259	0.61
Non-Cytoplasmic	260	274	0.67
Transmembrane Helix	275	294	0.86
Cytoplasmic	295	386	0.87