YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG1_PANGI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSSSTTTT DTLHSFMEAS ALLIDQYFLG WIFAFLFGFL LLLNFKRKRE KNNSTEFGTD  60
   61 DSNGYYTPEN IAGSTDVIIV GAGVAGSALA YTLANDGRRV HVIERDLTEQ DRIVGELLQP 120
  121 GGYLKLIELG LEDCVNEIDA QRVFGYALYM DGKNTRLSYP LEKFHSDVAG RSFHNGRFVQ 180
  181 RMREKAASLP NVRMEQGTVT SLVEKKGSVK GVQYKTKDGQ ELSAFAPLTI VCDGCFSNLR 240
  241 RSLCNPKVEV PSCFVGLILE NIDLPHINHG HVILADPSPI LFYKISSTEI RCLVDVPGQK 300
  301 VPCISNGELA NYLKTVVAPQ VPKQLYNSFI AAVDKGNIRT MPNRSMPADP HPTPGALLLG 360
  361 DAFNMRHPLT GGGMTVALSD IVLIRDLLRP LRDLHDSSTL CKYLESFYTL RKPVASTINT 420
  421 LAGALYKVFC ASPDKARQEM RNACFDYLSL GGICSQGPIA LLSGLNPRPI SLFLHFFAVA 480
  481 IYGVGRLLIP FPSPKRMWLG ARLILGASGI IFPIIKSEGL RQMFFPAIVP AYYRAPPIH

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.80
Transmembrane Helix	23	45	0.87
Cytoplasmic	46	442	0.83
Transmembrane Helix	443	462	0.78
Non-Cytoplasmic	463	470	0.70
Transmembrane Helix	471	490	0.93
Cytoplasmic	491	497	0.88
Transmembrane Helix	498	516	0.91
Non-Cytoplasmic	517	539	0.84