YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.19
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVKYDAII IGAGVIGPTI ATAFARQGRK VLIVERDWSK PDRIVGELMQ PAGIKALREL  60
   61 GMIKAINNIR AVDCTGYYIK YYDETITIPY PLKKDACITN PVKPVPDAVD GVNDKLDSDS 120
  121 TLNVDDWDFD ERVRGAAFHH GDFLMNLRQI CRDEPNVTAV EATVTKILRD PSDPNTVIGV 180
  181 QTKQPSGTVD YHAKLTISCD GIYSKFRKEL SPTNVPTIGS YFIGLYLKNA ELPAKGKGHV 240
  241 LLGGHAPALI YSVSPTETRV LCVYVSSKPP SAANDAVYKY LRDNILPAIP KETVPAFKEA 300
  301 LEERKFRIMP NQYLSAMKQG SENHKGFILL GDSLNMRHPL TGGGMTVGLN DSVLLAKLLH 360
  361 PKFVEDFDDH QLIAKRLKTF HRKRKNLDAV INTLSISLYS LFAADKKPLR ILRNGCFKYF 420
  421 QRGGECVNGP IGLLSGMLPF PMLLFNHFFS VAFYSVYLNF IERGLLGFPL ALFEAFEVLF 480
  481 TAIVIFTPYL WNEIVR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.19
Transmembrane Helix	8	26	0.40
Non-Cytoplasmic	27	430	0.55
Transmembrane Helix	431	458	0.68
Cytoplasmic	459	465	0.37
Transmembrane Helix	466	491	0.82
Non-Cytoplasmic	492	496	0.46