YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD2_PLAFA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFRLIGDI LHLVSMYILI MKLKKSKNCI GISCRMQELY LIVFLCRYID LFFVFVSFYN  60
   61 TVMKITFILT IAYTIYLIRL KLPISQTYNR KVDNFKSEKY LIPPCLVLSL LTCKTYNLYN 120
  121 ILWSFSIWLE SVAILPQLVL LEKQREVENI TSHYVITMGL YRAFYILNWI YRYFFDDKPY 180
  181 INVVGWIGGL IQTLLYIDFF YYFALAKWYG KKLVLPFNGE V

Type	Start	End	Confidence
Cytoplasmic	1	38	0.61
Transmembrane Helix	39	59	0.68
Non-Cytoplasmic	60	60	0.51
Transmembrane Helix	61	80	0.72
Cytoplasmic	81	99	0.64
Transmembrane Helix	100	118	0.44
Non-Cytoplasmic	119	120	0.49
Transmembrane Helix	121	141	0.61
Cytoplasmic	142	149	0.70
Transmembrane Helix	150	171	0.75
Non-Cytoplasmic	172	182	0.69
Transmembrane Helix	183	205	0.88
Cytoplasmic	206	221	0.80