YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LMAN1_CHLAE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSRRRGLQ ARVRPLFCAL LLSLSRFVGG DGVGGDPAAG LPHRRFEYKY SFKGPHLVQS  60
   61 DGTVPFWAHA GNAIPSSDQI RVAPSLKSQR GSVWTKAKAA FENWEVEVTF RVTGRGRIGA 120
  121 DGLAIWYTEN QGLEGPVFGS ADLWNGVGIF FDSFDNDGKK NNPAIVIIGN NGQIHYDHQN 180
  181 DGASQALASC QRDFRNKPYP VRAKIIYYQK TLTVMINNGF TPDKNDYEFC AKVENMIIPA 240
  241 QGHFGVSAAT GGLADDHDVL SFLTFQLTEP GKEPPTPDKE ISEKEKEKYQ EEFEHFQQEL 300
  301 DKKKEEFQKG HPDLQGQPAE EIFESVGDRE LRQVFEGQNR IHLEIKQLNR QLDMILDEQR 360
  361 RYVSSLTEEI SKRGAGMPGQ HGQISQQELD TVVKTQHEIL RQVNEMKNSM SETVRLVSGM 420
  421 QHPGSAGGVY ETAQHFADIK EHLHTVKRDI DNLVQRHMLS NEKPKCPELP PFPSCLSTVH 480
  481 FIIFVVVQTV LFIGYIMYRS QQEAAAKKFF

Type	Start	End	Confidence
Signal Peptide	1	30	0.99
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	477	0.99
Transmembrane Helix	478	498	0.94
Cytoplasmic	499	510	0.95