YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ER24_NEUCR, ERG2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	82	0.94
Transmembrane Helix	83	106	0.84
Cytoplasmic	107	125	0.96
Transmembrane Helix	126	148	0.89
Non-Cytoplasmic	149	159	0.92
Transmembrane Helix	160	183	0.88
Cytoplasmic	184	236	0.77
Transmembrane Helix	237	255	0.53
Non-Cytoplasmic	256	256	0.35
Transmembrane Helix	257	280	0.71
Cytoplasmic	281	289	0.37
Transmembrane Helix	290	310	0.76
Non-Cytoplasmic	311	324	0.50
Transmembrane Helix	325	345	0.93
Cytoplasmic	346	400	0.49
Transmembrane Helix	401	415	0.49
Non-Cytoplasmic	416	435	0.55
Transmembrane Helix	436	457	0.73
Cytoplasmic	458	490	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKQNQAAP KKAVAPRQQH YEFGGPIGAF GITFGLPILV HVFNLFCNDI SGCPAPSLLH  60
   61 PKSLDLAQLK REIGWPDNGV FGLFSWSATL WTLGYYALSL VQYRFLPGHH VEGTELSTGG 120
  121 RLKYKLNAFN SAMCTLAILA AGTIAQGAEF PVWTFISDNF AQIISANILF AFALAIFVYV 180
  181 RSFDVKPGNK DMRQLAAGGV TGSLIYDFYI GRELNPRITL PLIGQVDIKE FMEMRPGLLG 240
  241 WIILNCAFIA KQYRLYGYVT DSILFITAIQ AFYVFDGIYM EPAVLTTMDI TTDGFGFMLS 300
  301 FGDVVWVPFM YSTQTRYLSV HPQQLGAFGL IAVGAVLAAG YSIFRLSNSQ KNNFRTNPED 360
  361 PSVKHLTYLQ TKTGSRLITS GWWGIARHIN YLGDWLQSWP YSLPTGIAGY QILSAGSNAP 420
  421 GAITMLDGRE VVQGEARGWG IVFTYFYILY FAILLIHRDL RDDEKCSKKY GDDWEKYKKL 480
  481 VKWRIVPGIY