YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1134869, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKSSKAVS EEQHGYEFFG PPGAFAISFL LPVLVYVFNF VCNDISGCPA PSLLSPKTLS  60
   61 LDKLKQEVGW PQDGFAGLVS WEASAATAGY ILLSLILYRV LPAHEVEGTE LRSGGRLKYR 120
  121 LNTLYSSSFT LAILAAGTAA QGAEFPVWTF ISDNFIQILT ANTIFSYAVA TFVYVRSFSV 180
  181 KPGNKENREL AAGGHTGNML YDWFIGRELN PRVVIPLIGE VDLKEWLELR PGMMGWIIFN 240
  241 CSWCAQQYRN YGYVTDSSIC ITLVQAVYVF DSWWNEPAIL TTMDITTDGF GMMLAFGDIV 300
  301 WVPFVYSLQT RYLAVHPVSL GPVGLAVMLS LIGLGFYIFR SANSEKNNFR TNPNDPKVSQ 360
  361 LKYIQTKKGS KLLISGWWGI ARHINYLGDW IQSWPYCLPT GLAGYQILNA GAQAEGALVM 420
  421 RDGREVVQGE AKGWGMLITY FYILYFAILL IHRERRDDDK CHRKYGEDWE KYRKIVRYRI 480
  481 IPGIY

Type	Start	End	Confidence
Cytoplasmic	1	17	0.92
Transmembrane Helix	18	38	0.91
Non-Cytoplasmic	39	78	0.93
Transmembrane Helix	79	101	0.89
Cytoplasmic	102	120	0.95
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	154	0.90
Transmembrane Helix	155	178	0.86
Cytoplasmic	179	284	0.84
Transmembrane Helix	285	305	0.81
Non-Cytoplasmic	306	317	0.55
Transmembrane Helix	318	339	0.92
Cytoplasmic	340	389	0.63
Transmembrane Helix	390	408	0.33
Non-Cytoplasmic	409	432	0.71
Transmembrane Helix	433	452	0.75
Cytoplasmic	453	485	0.78