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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EPHA3_CHICK
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRRRLPLLL LCAALGSAGR LSARPGNEVN LLDSKTIQGE LGWISYPSHG WEEISGVDEH  60
   61 YTPIRTYQES NVMDHSQNNW LRTNWIPRNS AQKIYVELKF TLRDCNSIPL VLGTCKETFN 120
  121 LYYMESDDDH LAKFREHQFT KIDTIAADES FTQMDLGDRI LKLNTEVREV GPVSKKGFYL 180
  181 AFQDVGACVA LVSVRVYFKK CPFTVKNLAM FPDTVPMDSQ SLVEVRGSCV NHSKEEEPPK 240
  241 MYCSTEGEWL VPIGKCLCNA GYEERGFACQ ACRPGFYKAS AGNVKCAKCP PHSSTYEDAS 300
  301 LNCRCEKNYF RSEKDPPSMA CTRPPSAPRN VISNINETSV ILDWSWPLDT GGRKDVTFNI 360
  361 ICKKCGGSSK ICEPCSDNVR FLPRQTGLTN TTVTVVDLLA HTNYTFEIDA VNGVSDLSTL 420
  421 SRQFAAVSIT TNQAAPSPIT VIRKDRTSRN SVSLSWQEPE HPNGIILDYE VKYYEKQEQE 480
  481 TSYTILRAKS TNVTISGLKP DTTYVFQIRA RTAARYGTSS RKFEFETSPD SFSISSENSQ 540
  541 VVMIAISAAV AIILLTVVVY VLIGRFCGYK KSKHGTDEKR LHFGNGHLKL PGLRTYVDPH 600
  601 TYEDPNQAVH EFAKELDASN ISIDKVVGAG EFGEVCSGRL KLPSKKEISV AIKTLKAGYT 660
  661 EKQRRDFLGE ASIMGQFDHP NIIRLEGVVT KSKPVMIVTE YMENGSLDSF LRKHDAQFTV 720
  721 IQLVGMLRGI ASGMKYLSDM GYVHRDLAAR NILINSNLVC KVSDFGLSRV LEDDPEAAYT 780
  781 TRGGKIPIRW TSPEAIAYRK FTSASDAWSY GIVLWEVMSY GERPYWEMSF QDVIKAVDEG 840
  841 YRLPPPMDCP AALYQLMLDC WQKDRNNRPK FEQIVSILDK LIRNPSSLKI ITNAAARPSN 900
  901 LLLDQSNIDI SAFRTAGDWL NGFRTGQCKG IFTGVEYSSC DTIAKISTDD MKKVGVTVVG 960
  961 PQKKIVSSIK TLETHTKNSP VPV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle