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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|279727
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKEIRKNY QHLWRWGIML RWGTMLLGML MICSAAEQLW VTVYYGVPVW KEATTTLFCA  60
   61 SDAKAYDTEA HNVWATHACV PTDPNPQEVV LVNVTENFNM WKNNMVEQMH ENIISLWDQS 120
  121 LKPCVKLTPL CVTLHCTDLR NTTNNNSSIE EKMKGEIKNC SFNVTTNIRD KVQKEYALFY 180
  181 KLDVVPIDND NNSTNTCYRL ISCDTSVITQ ACPKVSFEPI PIHYCTPAGF ALLKCNNKTF 240
  241 NGTGPCKNVS TVQCTHGIRP VVSTQLLLNG SLAEEGVVIR SENFTDNVKT IIVQLNETVK 300
  301 INCIRPNNKT RKRVTMGPGR VYYTTGEIIG DIRQAHCNIS RAEWNKTLEQ IANKLRKQFE 360
  361 NKTIVFNQSS GGDPEIVMHN FNCGGEFFYC DSSQLFNSTH LSNGTWWNGT GPENITLPCR 420
  421 IKQIVNMWQE VGKAMYAPPI RGQIRCSSNI TGLLLTRDGG NTQNNNTNSS IEIFRPGGGD 480
  481 MRDNWRSELY KYKVVKIEPL GVAPTRAKRR VVQREKRAVG IGAVFLGFLG AAGSTMGAAA 540
  541 VTLTVQARQL LPGIVQQQNN LLRAIDAQQH LLQLTVWGIK QLQARVLAVE RYLKDQQLMG 600
  601 IWGCSGKFIC TTAVPWNTSW SNKSFNEIWD NMTWMEWERE INNYTNLIYN LIEESQNQQE 660
  661 KNEQDLLALD KWDSLWNWFS ITKWLWYIKI FIMIVGGLVG LRIVFTVLSI VNRVRQGYSP 720
  721 LSFQTRLPAR GPDRPEGIEE EGGERDRDRS GPLVDGLLAL IWVDLRSLCL FSYHRLRDLL 780
  781 LIVTRTVELL GRKGWEVLKY LWNLLQYWSQ ELKNSAVSLL NATAIAVAEG TDRVIEILQR 840
  841 TYRAILHIPV KIRQGLERAL L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle