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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|326683
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.82
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRARGIERNC QNWWKWGIML LGILMTCSAA DNLWVTVYYG VPVWKEATTT LFCASDAKSY  60
   61 ETEAHNIWAT HACVPTDPNP QEIALENVTE NFNMWKNNMV EQMHEDIISL WDQSLKPCVK 120
  121 LTPLCVTLNC SDELRNNGTM GNNVTTEEKG MKNCSFNVTT VLKDKKQQVY ALFYRLDIVP 180
  181 IDNDSSTNST NYRLINCNTS AITQACPKVS FEPIPIHYCA PAGFAILKCR DKKFNGTGPC 240
  241 TNVSTVQCTH GIRPVVSTQL LLNGSLAEEE VIIRSENLTN NAKNIIAHLN ESVKITCARP 300
  301 YQNTRQRTPI GLGQSLYTTR SRSIIGQAHC NISRAQWSKT LQQVARKLGT LLNKTIIKFK 360
  361 PSSGGDPEIT THSFNCGGEF FYCNTSGLFN STWNISAWNN ITESNNSTNT NITLQCRIKQ 420
  421 IIKMVAGRKA IYAPPIERNI LCSSNITGLL LTRDGGINNS TNETFRPGGG DMRDNWRSEL 480
  481 YKYKVVQIEP LGVAPTRAKR RVVEREKRAI GLGAMFLGFL GAAGSTMGAR SVTLTVQARQ 540
  541 LMSGIVQQQN NLLRAIEAQQ HLLQLTVWGI KQLQARILAV ERYLKDQQLL GIWGCSGKHI 600
  601 CTTNVPWNSS WSNRSLNEIW QNMTWMEWER EIDNYTGLIY SLIEESQTQQ EKNEKELLEL 660
  661 DKWASLWNWF SITQWLWYIK IFIMIIGGLI GLRIVFAVLS LVNRVRQGYS PLSFQTLLPA 720
  721 PRGPDRPEGT EEEGGERGRD RSVRLLNGFS ALIWDDLRSL CLFSYHRLRD LILIAVRIVE 780
  781 LLGRRGWDIL KYLWNLLQYW SQELRNSASS LFDAIAIAVA EGTDRVIEII QRACRAVLNI 840
  841 PRRIRQGLER SLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle