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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|326430
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.56
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKGIKKNY QHLWRWGGMM LLGILMICSA TDKLWVTVYY GVPVWKEANT TLFCASDAKA  60
   61 YDTEIHNVWA THACVPTDPN PQELVMGNVT ENFNMWKNDM VEQMHEDIIS LWDQSLKPCV 120
  121 KLTPLCVTLN CHDFNATNAT SNSGKMMEGG EMKNCSFNIT TSIRDKMQKE YALFYKLDIV 180
  181 PIDNDKTNTR YRLISCNTSV ITQACPKVTF EPIPIHYCAP AGFAILKCNN KKFNGTGPCT 240
  241 NVSTVQCTHG IRPVVSTQLL LNGSLAEEEV VIRSENFTNN VKTIIVQLNE SVEINCTRPN 300
  301 NNTRKRITMG PGRVYYTTGQ IIGDIRRAHC NLSRSKWENT LKQIVTKLRV QFKNKTIVFN 360
  361 RSSGGDPEIV MHSFNCGGEF FFCNTTQLFN STWYRNTTGN ITEGNSPITL PCRIKQIINM 420
  421 WQEVGKAMYA PPIRGQIKCS SNITGLLLTR DGGNNNETTD TEIFRPGGGN MRDNWRSELY 480
  481 KYKVVKIEPL GVAPTKAKRR VVQREKRAVG LGALFLGFLG AAGSTMGAAS LTLTVQARLL 540
  541 LSGIVQQQNN LLMAIEAQQH MLELTVWGIK QLQARVLAVE RYLKDQQLLG IWGCSGKLIC 600
  601 TTAVPWNASW SNKSLSDIWD NMTWMEWERE IDNYTNLIYS LIEDSQIQQE KNEKELLELD 660
  661 KWASLWNWFN ITNWLWYIKI FIMIVGGLIG LRIVFAVLSI VNRVRQGYSP LSFQTRLPGR 720
  721 RGPDRPEGIE EEGGERDRDR SSPLVDGFLA LFWVDLRSLF LFSYHRLRDL LLIVTRIVEL 780
  781 LGRRGWEVLK YWWNLLQYWS QELKNSAVSL LNATAIAVGE RTDRAIEVVQ RAFRAILHIP 840
  841 RRIRQGLERA LQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle