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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|327470
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVKEKYQHL WRWGWRWGTM LLGMLMICSA TEKLWVTVYF GVPVWKEATT TLFCASDAKA  60
   61 YDTEVHNVWA THACVPTDPN PQEVVLVNVT ENFNMWKNDM VEQMHEDIIS LWDQSLKPCV 120
  121 KLTPLCVSLK CTDLKNDTNT NSSSGRMIME KGEIKNCSFN ISTSKRGKVQ KEYAFFYKLD 180
  181 IIPIDNDTTS YTLTSCNTSV ITQACPKVSF EPIPIHYCAP AGFAILKCNN KTFNGTGPCT 240
  241 NVSTVQCTHG IRPVVSTQLL LNGSLAEEEV VIRSVNFTDN AKTIIVQLDT SVEINCTRPN 300
  301 NNTRKKIRIQ RGPGRAFVTI GKIGNMRQAH CNISRAKWNA TLKQIDSKLR EQFGNNKTII 360
  361 FKQSSGGDPE IVTHSFNCGG EFFYCNSTQL FNSTWSTKGS NNTEGSDTIT LPCRIKQIIN 420
  421 MWQEVGKAMY APPISGQIRC SSNITGLLLT RDGGNSNNES EIFRPGGGDM RDNWRSELYK 480
  481 YKVVKIEPLG VAPTKAKRRV VQREKRAVGI GALFLGFLGA AGSTMGAASM TLTVQARQLL 540
  541 SGIVQQQNNL LRAIEGQQHL LQLTVWGIKQ LQARILAVER YLKDQQLLGI WGCSGKLICT 600
  601 TAVPWNASWS NKSLEQIWNN MTWMEWDREI NNYTSLIHSL IEESQNQQEK NEQELLELDK 660
  661 WASLWNWFNI TNWLWYIKLF IMIVGGLVGL RIVFAVLSIV NRVRQGYSPL SFQTHLPNPR 720
  721 GPDRPEGIEE EGGERDRDRS IRLVNGSLAL IWDDLRSLCL FSYHRLRDLL LIVTRIVELL 780
  781 GRRGWEALKY WWNLLQYWSQ ELKNSAVNLL NATAIAVAEG TDRVIELVQA AYRAIRHIPR 840
  841 RIRQGLERIL L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle