YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EMRY_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.87
Transmembrane Helix	11	32	0.87
Non-Cytoplasmic	33	54	0.90
Transmembrane Helix	55	74	0.92
Cytoplasmic	75	84	0.75
Transmembrane Helix	85	104	0.94
Non-Cytoplasmic	105	109	0.75
Transmembrane Helix	110	132	0.88
Cytoplasmic	133	142	0.87
Transmembrane Helix	143	165	0.92
Non-Cytoplasmic	166	170	0.89
Transmembrane Helix	171	193	0.92
Cytoplasmic	194	204	0.85
Transmembrane Helix	205	224	0.94
Non-Cytoplasmic	225	234	0.83
Transmembrane Helix	235	255	0.94
Cytoplasmic	256	273	0.91
Transmembrane Helix	274	295	0.92
Non-Cytoplasmic	296	306	0.82
Transmembrane Helix	307	328	0.91
Cytoplasmic	329	338	0.77
Transmembrane Helix	339	356	0.94
Non-Cytoplasmic	357	372	0.77
Transmembrane Helix	373	394	0.87
Cytoplasmic	395	407	0.87
Transmembrane Helix	408	426	0.67
Non-Cytoplasmic	427	483	0.66
Transmembrane Helix	484	502	0.92
Cytoplasmic	503	512	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAITKSTPAP LTGGTLWCVT IALSLATFMQ MLDSTISNVA IPTISGFLGA STDEGTWVIT  60
   61 SFGVANAIAI PVTGRLAQRI GELRLFLLSV TFFSLSSLMC SLSTNLDVLI FFRVVQGLMA 120
  121 GPLIPLSQSL LLRNYPPEKR TFALALWSMT VIIAPICGPI LGGYICDNFS WGWIFLINVP 180
  181 MGIIVLTLCL TLLKGRETET SPVKMNLPGL TLLVLGVGGL QIMLDKGRDL DWFNSSTIII 240
  241 LTVVSVISLI SLVIWESTSE NPILDLSLFK SRNFTIGIVS ITCAYLFYSG AIVLMPQLLQ 300
  301 ETMGYNAIWA GLAYAPIGIM PLLISPLIGR YGNKIDMRLL VTFSFLMYAV CYYWRSVTFM 360
  361 PTIDFTGIIL PQFFQGFAVA CFFLPLTTIS FSGLPDNKFA NASSMSNFFR TLSGSVGTSL 420
  421 TMTLWGRRES LHHSQLTATI DQFNPVFNSS SQIMDKYYGS LSGVLNEINN EITQQSLSIS 480
  481 ANEIFRMAAI AFILLTVLVW FAKPPFTAKG VG