YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EMRB_HAEIN
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	32	0.85
Non-Cytoplasmic	33	54	0.85
Transmembrane Helix	55	76	0.90
Cytoplasmic	77	84	0.79
Transmembrane Helix	85	102	0.97
Non-Cytoplasmic	103	109	0.71
Transmembrane Helix	110	132	0.89
Cytoplasmic	133	142	0.87
Transmembrane Helix	143	165	0.91
Non-Cytoplasmic	166	170	0.85
Transmembrane Helix	171	193	0.91
Cytoplasmic	194	204	0.91
Transmembrane Helix	205	224	0.92
Non-Cytoplasmic	225	237	0.84
Transmembrane Helix	238	257	0.95
Cytoplasmic	258	273	0.91
Transmembrane Helix	274	298	0.87
Non-Cytoplasmic	299	305	0.82
Transmembrane Helix	306	328	0.89
Cytoplasmic	329	336	0.83
Transmembrane Helix	337	357	0.91
Non-Cytoplasmic	358	372	0.89
Transmembrane Helix	373	394	0.90
Cytoplasmic	395	405	0.85
Transmembrane Helix	406	426	0.88
Non-Cytoplasmic	427	483	0.89
Transmembrane Helix	484	502	0.96
Cytoplasmic	503	510	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSAKKFPP IQGGALILLT LALSLATFMQ VLDSTIANVA IPTIAGDLGA SFSQGTWVIT  60
   61 SFGVANAISI PITGWLAKRF GEVRLFLVST FLFVVSSWLC GIADSLEALI IFRVIQGAVA 120
  121 GPVIPLSQSL LLNNYPPEKR GMALAFWSMT IVVAPIFGPI LGGWISDNIH WGWIFFINVP 180
  181 IGLSVVLISW KILGSRESEI VHQPIDKVGL VLLVLGVGCL QLMLDQGREQ DWFNSNEIII 240
  241 LAVVAVVCLI ALVIWELTDD NPVVDISLFH SRNFSVGCLC TSLAFLIYLG SVVLIPLLLQ 300
  301 QVFHYTATWA GLAASPVGLF PILLSPIIGR FGYKIDMRIL VTISFIVYAI TFYWRAVTFE 360
  361 PSMTFVDVAL PQLVQGLAVS CFFMPLTTIT LSGLPAHKMA SASSLFNFLR TLAGSVGTSL 420
  421 TTFMWYNREA VHHTQLTEHI NPYNPISQSF YHQMNQFGLS DTQTSAYLAQ QITSQGFIIG 480
  481 ANEIFWLSAM GFLGLLIVIW FAKPPFGTQH