YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|168778668, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	33	0.85
Non-Cytoplasmic	34	50	0.85
Transmembrane Helix	51	72	0.92
Cytoplasmic	73	80	0.87
Transmembrane Helix	81	101	0.91
Non-Cytoplasmic	102	107	0.66
Transmembrane Helix	108	128	0.91
Cytoplasmic	129	138	0.84
Transmembrane Helix	139	161	0.92
Non-Cytoplasmic	162	166	0.87
Transmembrane Helix	167	189	0.90
Cytoplasmic	190	200	0.92
Transmembrane Helix	201	220	0.94
Non-Cytoplasmic	221	233	0.79
Transmembrane Helix	234	251	0.98
Cytoplasmic	252	269	0.88
Transmembrane Helix	270	291	0.92
Non-Cytoplasmic	292	302	0.79
Transmembrane Helix	303	324	0.92
Cytoplasmic	325	335	0.78
Transmembrane Helix	336	353	0.97
Non-Cytoplasmic	354	368	0.87
Transmembrane Helix	369	390	0.91
Cytoplasmic	391	479	0.68
Transmembrane Helix	480	498	0.95
Non-Cytoplasmic	499	512	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQQKPLEGA QLVIMTIALS LATFMQVLDS TIANVAIPTI AGNLGSSLSQ GTWVITSFGV  60
   61 ANAISIPLTG WLAKRVGEVK LFLWSTIAFA IASWACGVSS SLNMLIFFRV IQGIVAGPLI 120
  121 PLSQSLLLNN YPPAKRSIAL ALWSMTVIVA PICGPILGGY ISDNYHWGWI FFINVPIGVA 180
  181 VVLMTLQTLR GRETRTERRR IDAVGLALLV IGIGSLQIML DRGKELDWFS SQEIIILTVV 240
  241 AVVAICFLIV WELTDDNPIV DLSLFKSRNF TIGCLCISLA YMLYFGAIVL LPQLLQEVYG 300
  301 YTATWAGLAS APVGIIPVIL SPIIGRFAHK LDMRRLVTFS FIMYAVCFYW RAYTFEPGMD 360
  361 FGASAWPQFI QGFAVACFFM PLTTITLSGL PPERLAAASS LSNFTRTLAG SIGTSITTTM 420
  421 WTNRESMHHA QLTESVNPFN PNAQAMYSQL EGLGMTQQQA SGWIAQQITN QGLIISANEI 480
  481 FWMSAGIFLV LLGLVWFAKP PFGAGGGGGG AH