YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGRL4_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	480	0.99
Transmembrane Helix	481	500	0.96
Cytoplasmic	501	509	0.88
Transmembrane Helix	510	531	0.87
Non-Cytoplasmic	532	547	0.77
Transmembrane Helix	548	572	0.86
Cytoplasmic	573	580	0.89
Transmembrane Helix	581	601	0.93
Non-Cytoplasmic	602	620	0.87
Transmembrane Helix	621	642	0.95
Cytoplasmic	643	663	0.91
Transmembrane Helix	664	687	0.85
Non-Cytoplasmic	688	693	0.74
Transmembrane Helix	694	715	0.92
Cytoplasmic	716	738	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLLLLVGL STLLNHSYTQ NCKTPCLPNA KCEVLDEVAA CFCSTGYTGN GITICEDVDE  60
   61 CNETSVCGDH AVCENTNGGF SCFCVEGYQT STGKTQFTPN DGSYCQDVDE CNETSVCGDH 120
  121 AVCENTNGGF SCFCVEGYQT STGKTQFTPN DGSYCQEIVN SNCHLEHDCI AANINKTLKR 180
  181 IGPITEQLTL LHEIYKNSEA ELSLVDIVTY IEILTESSSL QGYIKNTTSP KDAYFGSALT 240
  241 EFGKTVNNFV EKNTHEMWDQ LPTNRRRLHL TKLMHAAEHV TLQISQNIQK NTQFDMNSTD 300
  301 LALKVFVFDS VHMKHTHPHM NVDGGYVKIS PRRKSAYDPN GNVIVAFLCY RSIGPLLSSS 360
  361 DDFLLGAQSD NSKGKEKVIS SVISASISSN PPTLYELEKI TFTLSHVKLS DKHQTQCAFW 420
  421 NYSVDDMNNG SWSSEGCELT YSNDTHTSCR CSHLTHFAIL MSPSTSIEVK DYNILTRITQ 480
  481 LGIIISLICL AICIFTFWFF SEIQSTRTTI HKNLCCSLFL AQLVFLVGIN INTNKLVCSI 540
  541 IAGLLHYFFL AAFAWMCIEG IYLYLIVVGL IYNKGFLHKN FYIFGYLSPA VVVGFSASLG 600
  601 YRYYGTTKVC WLSTENNFIW SFIGPACLII LVNLLAFGVI IYKVFRHTAG LKPEVSCYEN 660
  661 IRSCARGALA LLFLLGTTWT FGVLHVVHAS VVTAYLFTVS NAFQGMFIFL FLCVLSRKIQ 720
  721 EEYYRLFKNV PCCFECLR