YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S1PR2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTCRLFAGF CQAVTMSKYS QYFNKTLIQV HYLTAKEMTA EELRDRIESK QSLSSLNILF  60
   61 VVICSIIILE NLLVLIAVFR NKKFHSAMFF FIGNLAFSDL LAGSAYIANI FLSGPRTFHL 120
  121 TPVQWFIREG TAFIALSASV FSLLAIAIER YIAITKVKVY GSNKTCRMFL LIGACWVMSI 180
  181 LLGGLPIIGW NCINNLDDCS AVLPLNTRYY IRFVVTIFSI ILLSIVILYV RIYLIVRTSH 240
  241 QEATNSPAYA LLKTVTIVLG VFIICWLPAF TILLLDTSCK MKQCPILNNA GIFFSFATLN 300
  301 SALNPLIYTL RSKDMRKEFL RVLCCWGLLN CGRPPHRCMV PLKSSSSMEH CTNKHEHQSI 360
  361 PIMQDCTTCV

Type	Start	End	Confidence
Non-Cytoplasmic	1	57	0.91
Transmembrane Helix	58	79	0.93
Cytoplasmic	80	87	0.88
Transmembrane Helix	88	110	0.90
Non-Cytoplasmic	111	129	0.87
Transmembrane Helix	130	148	0.94
Cytoplasmic	149	167	0.82
Transmembrane Helix	168	190	0.91
Non-Cytoplasmic	191	209	0.95
Transmembrane Helix	210	233	0.90
Cytoplasmic	234	249	0.92
Transmembrane Helix	250	273	0.88
Non-Cytoplasmic	274	289	0.85
Transmembrane Helix	290	310	0.89
Cytoplasmic	311	370	0.93