YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S1PR1_MOUSE, EDG...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTSIPEVK ALRSSVSDYG NYDIIVRHYN YTGKLNIGAE KDHGIKLTSV VFILICCFII  60
   61 LENIFVLLTI WKTKKFHRPM YYFIGNLALS DLLAGVAYTA NLLLSGATTY KLTPAQWFLR 120
  121 EGSMFVALSA SVFSLLAIAI ERYITMLKMK LHNGSNSSRS FLLISACWVI SLILGGLPSM 180
  181 GWNCISSLSS CSTVLPLYHK HYILFCTTVF TLLLLSIVIL YCRIYSLVRT RSRRLTFRKN 240
  241 ISKASRSSEK SLALLKTVII VLSVFIACWA PLFILLLLDV GCKAKTCDIL YKAEYFLVLA 300
  301 VLNSGTNPII YTLTNKEMRR AFIRIVSCCK CPNGDSAGKF KRPIIPGMEF SRSKSDNSSH 360
  361 PQKDDGDNPE TIMSSGNVNS SS

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.94
Transmembrane Helix	48	71	0.88
Cytoplasmic	72	80	0.89
Transmembrane Helix	81	102	0.88
Non-Cytoplasmic	103	121	0.84
Transmembrane Helix	122	140	0.93
Cytoplasmic	141	160	0.82
Transmembrane Helix	161	182	0.91
Non-Cytoplasmic	183	200	0.94
Transmembrane Helix	201	225	0.91
Cytoplasmic	226	251	0.98
Transmembrane Helix	252	275	0.90
Non-Cytoplasmic	276	294	0.87
Transmembrane Helix	295	314	0.85
Cytoplasmic	315	382	0.89