YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ECHB_BOVIN
Protein type:	Globular with Signal Peptide
Type Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLLTYTLK NLPNTSKWAL RFCMRPLSSS SQLQAAAASQ TKSKKTLAKP NIRNIVVVDG  60
   61 VRTPFLLSGT SYKDLMPHDL ARAALSGLLH RTSVPKDVVD YIIFGTVIQE VKTSNVAREA 120
  121 ALGAGFSDKT PAHTVTMACI SSNQAMTTAV GLIASGQCDV VVAGGVELMS DIPIRHSRKM 180
  181 RKMMLDLNKA KTLAQRLSII SKFRLNFLSP ELPAVSEFST SETMGHSADR LAAAFAISRE 240
  241 EQDEYALRSH SLAKKAQDEG LLSDVVPFKV PGRDTVTQDN GIRPSSLDQM AKLKPAFIKP 300
  301 YGTVTAANSS FLTDGASAVL IMAEEKALAM GYKPKAYLRD FMYVSQDPKD QLLLGPTYAT 360
  361 PKVLEKAGLT MNDIDVFEFH EAFSGQILAN LKAMDSDWFA QNYMGRKAKV GLPPLEKFNN 420
  421 WGGSLSLGHP FGATGCRLVM AAANRLRKEG GQYGLVAACA AGGQGHAMIV EAYPK

Type	Start	End	Confidence
Signal Peptide	1	37	0.58
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	475	0.96