YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|168244990, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSILWNLAA FIIALGVLIT VHEFGHFWVA RRCGVRVERF SIGFGKALWR RTDRYGTEYV  60
   61 IALIPLGGYV KMLDERAEPV APELRRHAFN NKTVGQRAAI IAAGPVANFI FAIFAYWLVF 120
  121 IIGVPGVRPV IGEITPNSIA AQAQIAPGTE LKAVDGIETP DWDAVRLQLV SKIGDQQTTV 180
  181 SVAPFGSDQR QDKTLDLRHW AFEPDKQDPV SSLGIRPRGP QIEPVLSEVQ ANSAASKAGL 240
  241 QAGDRIVKVD GQPLTQWMKF VTFVRDNPGK PLALEIERQG SALSLTLTPD TKSVNGKAEG 300
  301 FAGVVPKIIP LPEEYKTIRQ YGPFSAILEA TDKTWQLMKL TVSMLGKLIT GDVKLNNLSG 360
  361 PISIAQGAGM SAEFGVIYYL MFLALISVNL GIINLFPLPV LDGGHLLFLA IEKLKGGPVS 420
  421 ERVQDFSYRI GSILLVLLMG LALFNDFSRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.59
Transmembrane Helix	8	30	0.86
Cytoplasmic	31	54	0.62
Transmembrane Helix	55	70	0.49
Non-Cytoplasmic	71	98	0.78
Transmembrane Helix	99	121	0.83
Cytoplasmic	122	375	0.89
Transmembrane Helix	376	398	0.89
Non-Cytoplasmic	399	425	0.82
Transmembrane Helix	426	447	0.89
Cytoplasmic	448	450	0.76