YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EAA3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.67
Transmembrane Helix	19	41	0.91
Cytoplasmic	42	61	0.65
Transmembrane Helix	62	82	0.91
Non-Cytoplasmic	83	93	0.64
Transmembrane Helix	94	116	0.88
Cytoplasmic	117	203	0.72
Transmembrane Helix	204	226	0.86
Non-Cytoplasmic	227	246	0.69
Transmembrane Helix	247	270	0.86
Cytoplasmic	271	282	0.67
Transmembrane Helix	283	307	0.88
Non-Cytoplasmic	308	316	0.65
Transmembrane Helix	317	340	0.81
Cytoplasmic	341	355	0.71
Transmembrane Helix	356	381	0.57
Non-Cytoplasmic	382	392	0.46
Transmembrane Helix	393	427	0.69
Cytoplasmic	428	523	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKPTSSGCD WRRFLRNHWL LLSTVAAVVL GIVVGVLVRG HSELSNLDKF YFAFPGEILM  60
   61 RMLKLVILPL IISSMITGVA ALDSNVSGKI GLRAVVYYFS TTVIAVILGI VLVVSIKPGV 120
  121 TQKVNEINRT GKTPEVSTVD AMLDLIRNMF PENLVQACFQ QYKTKREEVK PASDPGGNQT 180
  181 EVSVTTAMTT MSENKTKEYK IVGLYSDGIN VLGLIIFCLV FGLVIGKMGE KGQILVDFFN 240
  241 ALSDATMKIV QIIMCYMPIG ILFLIAGKII EVEDWEIFRK LGLYMATVLS GLAIHSLVVL 300
  301 PLIYFIVVRK NPFRFALGMA QALLTALMIS SSSATLPVTF RCAEEKNHVD KRITRFVLPV 360
  361 GATINMDGTA LYEAVAAVFI AQLNGMDLSI GQIITISITA TAASIGAAGV PQAGLVTMVI 420
  421 VLSAVGLPAE DVTLIIAVDW LLDRFRTMVN VLGDAFGTGI VEKLSKKELE QVDVSSEVNI 480
  481 VNPFALEPTI LDNEDSDTKK SYVNGGFSVD KSDTISFTQT SQF