YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S12A5_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.92
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	122	0.95
Transmembrane Helix	123	146	0.83
Cytoplasmic	147	155	0.73
Transmembrane Helix	156	178	0.89
Non-Cytoplasmic	179	198	0.64
Transmembrane Helix	199	213	0.67
Cytoplasmic	214	214	0.31
Transmembrane Helix	215	237	0.75
Non-Cytoplasmic	238	252	0.46
Transmembrane Helix	253	272	0.84
Cytoplasmic	273	277	0.54
Transmembrane Helix	278	298	0.94
Non-Cytoplasmic	299	419	0.66
Transmembrane Helix	420	440	0.76
Cytoplasmic	441	456	0.77
Transmembrane Helix	457	480	0.86
Non-Cytoplasmic	481	505	0.79
Transmembrane Helix	506	528	0.84
Cytoplasmic	529	557	0.86
Transmembrane Helix	558	577	0.91
Non-Cytoplasmic	578	582	0.81
Transmembrane Helix	583	605	0.91
Cytoplasmic	606	618	0.81
Transmembrane Helix	619	642	0.89
Non-Cytoplasmic	643	1139	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRFTVTSL PPAASAASAD PESRRHSVAD PRRLPREDVK GDGNPKESSP FINSTDTEKG  60
   61 REYDGRNMAL FEEEMDTSPM VSSLLSGLAN YTNLPQGSKE HEEAENNEGG KKKPVQAPRM 120
  121 GTFMGVYLPC LQNIFGVILF LRLTWVVGIA GIMESFCMVF ICCSCTMLTA ISMSAIATNG 180
  181 VVPAGGSYYM ISRSLGPEFG GAVGLCFYLG TTFAGAMYIL GTIEILLAYL FPAMAIFKAE 240
  241 DASGEAAAML NNMRVYGTCV LTCMATVVFV GVKYVNKFAL VFLGCVILSI LAIYAGVIKS 300
  301 AFDPPNFPIC LLGNRTLSRH GFDVCAKLAW EGNETVTTRL WGLFCSSRLL NATCDEYFTR 360
  361 NNVTEIQGIP GAASGLIKEN LWSSYLTKGV IVERRGMPSV GLADGTPVDM DHPYVFSDMT 420
  421 SYFTLLVGIY FPSVTGIMAG SNRSGDLRDA QKSIPTGTIL AIATTSAVYI SSVVLFGACI 480
  481 EGVVLRDKFG EAVNGNLVVG TLAWPSPWVI VIGSFFSTCG AGLQSLTGAP RLLQAISRDG 540
  541 IVPFLQVFGH GKANGEPTWA LLLTACICEI GILIASLDEV APILSMFFLM CYMFVNLACA 600
  601 VQTLLRTPNW RPRFRYYHWT LSFLGMSLCL ALMFICSWYY ALVAMLIAGL IYKYIEYRGA 660
  661 EKEWGDGIRG LSLSAARYAL LRLEEGPPHT KNWRPQLLVL VRVDQDQNVV HPQLLSLTSQ 720
  721 LKAGKGLTIV GSVLEGTFLD NHPQAQRAEE SIRRLMEAEK VKGFCQVVIS SNLRDGVSHL 780
  781 IQSGGLGGLQ HNTVLVGWPR NWRQKEDHQT WRNFIELVRE TTAGHLALLV TKNVSMFPGN 840
  841 PERFSEGSID VWWIVHDGGM LMLLPFLLRH HKVWRKCKMR IFTVAQMDDN SIQMKKDLTT 900
  901 FLYHLRITAE VEVVEMHESD ISAYTYEKTL VMEQRSQILK QMHLTKNERE REIQSITDES 960
  961 RGSIRRKNPA NTRLRLNVPE ETACDNEEKP EEEVQLIHDQ SAPSCPSSSP SPGEEPEGEG1020
 1021 ETDPEKVHLT WTKDKSAAQK NKGPSPVSSE GIKDFFSMKP EWENLNQSNV RRMHTAVRLN1080
 1081 EVIVNKSRDA KLVLLNMPGP PRNRNGDENY MEFLEVLTEQ LDRVMLVRGG GREVITIYS