YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glt-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	30	0.96
Non-Cytoplasmic	31	49	0.87
Transmembrane Helix	50	70	0.90
Cytoplasmic	71	83	0.85
Transmembrane Helix	84	106	0.93
Non-Cytoplasmic	107	185	0.97
Transmembrane Helix	186	207	0.88
Cytoplasmic	208	223	0.92
Transmembrane Helix	224	247	0.87
Non-Cytoplasmic	248	261	0.86
Transmembrane Helix	262	286	0.90
Cytoplasmic	287	297	0.88
Transmembrane Helix	298	318	0.65
Non-Cytoplasmic	319	348	0.57
Transmembrane Helix	349	365	0.42
Cytoplasmic	366	366	0.32
Transmembrane Helix	367	391	0.70
Non-Cytoplasmic	392	392	0.34
Transmembrane Helix	393	416	0.60
Cytoplasmic	417	541	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYSRMKESQ LLVFTLIAVG IGFASGILLR QFDLSDNARN LVGFPGEIFM QVLKLMVLPL  60
   61 IFSSLISSLG QMDASRSGKM SFIAIAYYLT TVIIASCIGV AMVFLFHPGD PDMRSHRPED 120
  121 VVIREDNNIS ALDSILDLIR NMFPQNIVEA TMYRSQTAFV VVRKKILKNG TITPVLMRKT 180
  181 IKLTQGTNIL GLIVFCTGFG IVISKLGGKV RVIVEFFIVL DKVVMKFISV LMLFAPFGIV 240
  241 SLIASSVLDI DDLYKMVTTM ALYVFTIMCS LFLHCVIAVP TLYFFITKKS PIDVAKGMVQ 300
  301 PFVTAIGTAS SGASLPQAMS SVEENLHVDA RIAGFIMPLG NTINMDGNAL YEAVAVIFVA 360
  361 QLNNVTLSFA DVITICVTAT FASIGLNAVP AGLVSMFVIL SSVNLPVSDI ALLFTVDWFI 420
  421 DRVRTALNVL GDAYCACVVQ HFLQDDLTHE HHHILDELKL EEGDLAEIDR PDQLPEKVKK 480
  481 VSFVDFHHIP SPSAPPVFNS TKTYSLKSAI IGPLRAHVAL QTRLSQLSEE CKLEEHESKD 540
  541 L