YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glt-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKRRDDIV QFCRENTLLV MTMFSVFLGV VLGFGLRPLN LSQETLQLIN FPGEIFMQVL  60
   61 KMMILPLIFS SLISALAQMD AKESGQMGAS TVLYYLSTAV LATILGIFLV TVIHPGDPSI 120
  121 KGTDISEAPS DGNVSPLDTF LDLVRNMFPE NIIQATFERM QTTYVAIRPK IASKNGTSGN 180
  181 IIVKRSIGMT KGMNILGIIV FCTGFGIVIS QLGERARIVV DFFVILDAVI MRWVVTLMWF 240
  241 APLGITCLIC GNLLELDDIS DIASVLALYV FTVCAGLILH TIITVPLMYF FITRENPLPI 300
  301 FKGMIQAAVT AFGTASGGAT LPMSMQCLED HCGVDRRISR FVLPLGSTIN MDGNALYEAV 360
  361 AVIFIAQLNN VQLSLAEVLT VSITATIASI GLGSVPAGLV SILLILNTVG LPVRDVSMLF 420
  421 TVDWLLDRVR TAVNVLGDAF AASMVQHLLQ KKLDQADARH DYKTELKGEI ELLKSAATSR 480
  481 RPSFTMSEAS KELFLTHANT AGNSRIGSRI GSRRPSSTNL HLSWRNNNIE PPYTPLPNDE 540
  541 NV

Type	Start	End	Confidence
Cytoplasmic	1	16	0.91
Transmembrane Helix	17	36	0.94
Non-Cytoplasmic	37	56	0.83
Transmembrane Helix	57	77	0.90
Cytoplasmic	78	91	0.80
Transmembrane Helix	92	113	0.93
Non-Cytoplasmic	114	191	0.90
Transmembrane Helix	192	213	0.87
Cytoplasmic	214	228	0.77
Transmembrane Helix	229	254	0.78
Non-Cytoplasmic	255	264	0.78
Transmembrane Helix	265	291	0.84
Cytoplasmic	292	299	0.78
Transmembrane Helix	300	321	0.79
Non-Cytoplasmic	322	382	0.63
Transmembrane Helix	383	409	0.79
Cytoplasmic	410	542	0.60