YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25090185
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSSLLILL AIVLLGSSQA ASHDQERERK LEVFEGVAVD YQIGYIGDFG GIDSGPPYII  60
   61 VAEAGVETDL AIDRATGEIR TKVKLDRETR ASYSLVAIPL SGRNIRVLVT VKDENDNAPT 120
  121 FPQTSMHIEF PENTPREVKR TLLPARDLDL EPYNTQRYNI VSGNVNDAFR LSSHRERDGV 180
  181 LYLDLQISGF LDRETTPGYS LLIEALDGGT PPLRGFMTVN ITIQDVNDNQ PIFNQSRYFA 240
  241 TVPENATVGT SVLQVYASDT DADENGLVEY AINRRQSDKE QMFRIDPRTG AIYINKALDF 300
  301 ETKELHELVV VAKDHGEQPL ETTAFVSIRV TDVNDNQPTI NVIFLSDDAS PKISESAQPG 360
  361 EFVARISVHD PDSKTEYANV NVTLNGGDGH FALTTRDNSI YLVIVHLPLD REIVSNYTLS 420
  421 VVATDKGTPP LHASKSIFLR ITDVNDNPPE FEQDLYHANV MEVADPGTSV LQVLAHDRDE 480
  481 GLNSALTYSL AETPETHAQW FQIDPQTGLI TTRSHIDCET EPVPQLTVVA RDGGVPPLSS 540
  541 TATVLVTIHD VNDNEPIFDQ SFYNVSVAEN EPVGRCILKV SASDPDCGVN AMVNYTIGEG 600
  601 FKHLTEFEVR SASGEICIAG ELDFERRSSY EFPVLATDRG GLSTTAMIKM QLTDVNDNRP 660
  661 VFYPREYKVS LRESPKASSQ ASSTPIVAVV ATDPDYGNFG QVSYRIVAGN EAGIFRIDRS 720
  721 TGEIFVVRPD MLSVRTQPMH MLNISATDGG NLRSNADAVV FLSIIDAMQR PPIFEKARYN 780
  781 YYVKEDIPRG TVVGSVIAAS GDVAHRSPVR YSIYSGDPDG YFSIETNSGN IRIAKPLDHE 840
  841 AKSQVLLNIQ ATLGEPPVYG HTQVNIEVED VNDNAPEFEA SMVRISVPES AELGAPLYAA 900
  901 HAHDKDSGSS GQVTYSLVKE SGKGLFAIDA RSGHLILSQH LDYESSQRHT LIVTATDGGV 960
  961 PSLSTNLTIL VDVQDVNDNP PVFEKDEYSV NVSESRSINA QIIQVNASDL DTGNNARITY1020
 1021 RIVDAGVDNV TNSISSSDVS QHFGIFPNSG WIYLRAPLDR ETRDRYQLTV LATDNGTPAA1080
 1081 HAKTRVIVRV LDANDNDPKF QKSKYEFRIE ENLRRGSVVG VVTASDLDLG ENAAIRYSLL1140
 1141 PINSSFQVHP VTGEISTREP LDRELRELYD LVVEARDQGT PVRSARVPVR IHVSDVNDNA1200
 1201 PEIADPQEDV VSVREEQPPG TEVVRVRAVD RDHGQNASIT YSIVKGRDSD GHGLFSIDPT1260
 1261 SGVIRTRVVL DHEERSIYRL GVAASDGGNP PRETVRMLRV EVLDLNDNRP TFTSSSLVFR1320
 1321 VREDAALGHV VGSISPIERP ADVVRNSVEE SFEDLRVTYT LNPLTKDLIE AAFDIDRHSG1380
 1381 NLVVARLLDR EVQSEFRLEI RALDTTASNN PQSSAITVKI EVADVNDNAP EWPQDPIDLQ1440
 1441 VSEATPVGTI IHNFTATDAD TGTNGDLQYR LIRYFPQLNE SQEQAMSLFR MDSLTGALSL1500
 1501 QAPLDFEAVQ EYLLIVQALD QSSNVTERLQ TSVTVRLRIL DANDHAPHFV SPNSSGGKTA1560
 1561 SLFISDATRI GEVVAHIVAV DEDSGDNGQL TYEITGGNGE GRFRINSQTG IIELVKSLPP1620
 1621 ATEDVEKGGR FNLIIGAKDH GQPEPKKSSL NLHLIVQGSH NNPPRFLQAV YRATILENVP1680
 1681 SGSFVLQVTA KSLHGAENAN LSYEIPAGVA NDLFHVDWQR GIITTRGQFD RESQASYVLP1740
 1741 VYVRDANRQS TLSSSAVRKQ RSSDSIGDTS NGQHFDVATI YITVGDVNDN SPEFRPGSCY1800
 1801 GLSVPENSEP GVIHTVVASD LDEGPNADLI YSITGGNLGN KFSIDSSSGE LSARPLDREQ1860
 1861 HSRYTLQIQA SDRGQPKSRQ GHCNITIFVE DQNDNAPRFK LSKYTGSVQE DAPLGTSVVQ1920
 1921 ISAVDADLGV NARLVYSLAN ETQWQFAIDG QSGLITTVGK LDRELQASYN FMVLATDGGR1980
 1981 YEVRSATVPV QINVLDINDN RPIFERYPYI GQVPALIQPG QTLLKVQALD ADLGANAEIV2040
 2041 YSLNAENSAV SAKFRINPST GALSASQSLA SESGKLLHLE VVARDKGNPP QSSLGLIELL2100
 2101 IGEAPQGTPV LRFQNETYRV MLKENSPSGT RLLQVVALRS DGRRQKVQFS FGAGNEDGIL2160
 2161 SLDSLSGEIR VNKPHLLDYD RFSTPSMSAL SRGRALHYEE EIDESSEEDP NNSTRSQRAL2220
 2221 TSSSFALTNS QPNEIRVVLV ARTADAPFLA SYAELVIELE DENDNSPKFS QKQFVATVSE2280
 2281 GNNKGTFVAQ VHAFDSDAGS NARLRYHIVD GNHDNAFVIE PAFSGIVRTN IVLDREIRDI2340
 2341 YKLKIIATDE GVPQMTGTAT IRVQIVDVND NQPTFPPNNL VTVSEATELG AVITSISAND2400
 2401 VDTYPALTYR LGAESTVDIE NMSIFALDRY SGKLVLKRRL DYELQQEYEL DVIASDAAHE2460
 2461 ARTVLTVRVN DENDNAPVFL AQQPPAYFAI LPAISEISES LSVDFDLLTV NATDADSEGN2520
 2521 NSKVIYIIEP AQEGFSVHPS NGVVSVNMSR LQPAVSSSGD YFVRIIAKDA GKPALKSSTL2580
 2581 LRVQANDNGS GRSQFLQNQY RAQISEAAPL GSVVLQLGQD ALDQSLAIIA GNEESAFELL2640
 2641 QSKAIVLVKP LDRERNDLYK LRLVLSHPHG PPLISSLNSS SGISVIITIL DANDNFPIFD2700
 2701 RSAKYEAEIS ELAPLRYSIA QLQAIDADQE NTPNSEVVYD ITSGNDEHMF TIDLVTGVLF2760
 2761 VNNRLDYDSG AKSYELIIRA CDSHHQRPLC SLQPFRLELH DENDNEPKFP LTEYVHFLAE2820
 2821 NEPVGSSVFR AHASDLDKGP FGQLNYSIGP APSDESSWKM FRVDSESGLV TSAFVFDYEQ2880
 2881 RQRYDMELLA SDMGGKKASV AVRVEIESRD EFTPQFTERT YRFVLPAAVA LPQGYVVGQV2940
 2941 TATDSDSGPD GRVVYQLSAP HSHFKVNRSS GAVLIKRKLK LDGDGDGNLY MDGRDISLVI3000
 3001 SASSGRHNSL SSMAVVEIAL DPLAHPGTNL ASAGGSSSGS IGDWAIGLLV AFLLVLCAAA3060
 3061 GIFLFIHMRS RKPRNAVKPH LATDNAGVGN TNSYVDPSAF DTIPIRGSIS GGAAGAASGQ3120
 3121 FAPPKYDEIP PFGAHAGSSG AATTSELSGS EQSGSSGRGS AEDDGEDEEI RMINEGPLHH3180
 3181 RNGGAGAGSD DGRISDISVQ NTQEYLARLG IVDHDPSGAG GGASSMAGSS HPMHLYHDDD3240
 3241 ATARSDITNL IYAKLNDVTG AGSEIGSSAD DAGTTAGSIG TIGTAITHGH GVMSSYGEVP3300
 3301 VPVPVVVGGS NVGGSLSSIV HSEEELTGSY NWDYLLDWGP QYQPLAHVFS EIARLKDDTL3360
 3361 SEHSGSGASS SAKSKHSSSH SSAGAGSVVL KPPPSAPPTH IPPPLLTNVA PRAINLPMRL3420
 3421 PPHLSLAPAH LPRSPIGHEA SGSFSTSSAM SPSFSPSLSP LATRSPSISP LGAGPPTHLP3480
 3481 HVSLPRHGHA PQPSQRGNVG TRM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle