YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSBD_VIBVU
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	192	0.99
Transmembrane Helix	193	215	0.88
Cytoplasmic	216	234	0.79
Transmembrane Helix	235	257	0.89
Non-Cytoplasmic	258	266	0.84
Transmembrane Helix	267	289	0.92
Cytoplasmic	290	311	0.87
Transmembrane Helix	312	333	0.92
Non-Cytoplasmic	334	350	0.79
Transmembrane Helix	351	371	0.94
Cytoplasmic	372	384	0.80
Transmembrane Helix	385	401	0.95
Non-Cytoplasmic	402	409	0.67
Transmembrane Helix	410	428	0.94
Cytoplasmic	429	439	0.86
Transmembrane Helix	440	462	0.89
Non-Cytoplasmic	463	593	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLTFFVA GLLVLSSPAM ALFGNNQNSS FASGSNDFVP VDQAFPFNYF QQDHRITLDW  60
   61 QVKEGYYLYQ QRLSFSAENV VLGDIQMENG QPYRDEFFGD VNIYTNPLFV NIPMQDWQPG 120
  121 AKLIVQYQGC AKAGFCYPPE TRVIDITSFT NGDMAPATMP TQTANPLDTS TPQPLTQQDQ 180
  181 LASGLADNWW TPLLFLALGV GLAFTPCVLP MYPILTSIVL GSGKLSQRRA LGLSLVYVQG 240
  241 MALTYTLLGL VVASAGLQFQ AAMQHPYVLI GLSILFVTLA LSMFGVYTLQ LPSSVQTWLN 300
  301 NLSNKQQGGS SAGVFAMGAI SGLVCSPCTT APLSGALLYV AQSGDLLTGG VALYALAMGM 360
  361 GIPLILVAVF GNKLLPKAGG WMDRVKTLFG FVLLAAPIFL LERILPEMWS TALWSALGIA 420
  421 AFGWLYHVKN SLEFGGWKQS AVGIIAVLGL FASAQPALNY WFTDSSQQTQ TSEVSFIKIR 480
  481 NVEELQQQLA LAKQAKKPVM LDFYADWCVA CKEFEKYTFH DPAVAAQLKQ FVLLQADVTR 540
  541 NQAQDIELLQ AQQVLGLPTI DFWDAQGNPV SNARLTGFMQ AAPFLEHIQR ISN